Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02189 ATGGACCAGTTCAATAACGATGATCTCGAGTATATTGTTGATGATTATGACGACTTCCTTGAATTTGAAGACGATCATATTTACGAAGACAATGAACCTAAAAGAAACTCTGATTATCTAGACTCGGACTTTGAAGATGATTTTGAAATGACCAAGCCGAAGACAGATACATCTGCTTTGGAAGCTAGAGAAGGGAAAGATATCCAGGGAATTCCATGGGAGAGGCTTAATTATACCAGAGACAAATACCGCGAGACTCGGTTGAAGCAATACAAAAACTATGAGAATCTCTCGCTTTCTCGTGATCAGCTCGACAAGGAGTGCCTGGAAGTTCATAAAGGGAATAATTTCTATGATTTCCAGTTTAATACGAGGCTTGTGAAATCAACAATTGTGCATTTTCAGCTGAGGAATTTGTTATGGGCAACATCGAAGCATGACGTATACCTTATGCAAAACTACTCAGTGATGCATTGGTCGTCATTACTCAGAAGGGGTAAAGAAGTACTTAATGTAGTCAAACCTATTGTTCCGACCCTTaaGCGCCCTGGATTCTTAGCTCAACCTTTGTCCAGAGTTCAAATTAGTACCATGGCTGTTAAGGAAAATCTGATGCTGGCAGGTGGCTTCCAGGGTGAGCTTATTTGCAAGAATTTGAATCAACCCGGCGTTACATTCTGCAGTAAAATAGCTACAGATGATAATGCTATAACCAATGCGGTGGATGTTTACCGCAATCATAATGGGTCGTTGAGGGTTATCACAGCGAATAATGATGCCCAAGTTAGAATTTTTGATGCTGAGAGTTTGTCCTGTCTCGGTTGTTTCAAGTATGATTGGTCTGTTAATAATACTTCTGTTAGTCCGGATGGAAAGCTGTTTGCAATTCTTGGGGATAATGCTGAGTGCTTGTTAGCTGACGCTAACACTGGAAAgGTTACTGGGAACCTAAGAGGGCACTTGGACTATTCTTTTGCCTCTGCTTGGCACCCTGATGGACGAATATTGGCTACTGGGAATCAAGACACAACGTGCAGGTTATGGGACATAAGAAATCTGTCGCAGTCTCTAGCTGTGGTGAAGGGAAGAATGGGTGCAATAAGATCCTTAAAATTCACATCCGATGGACGGTTTTTGGCCATGGCTGAACCAGCAGATTTTGTCCATATTTTGGACTCTCAGTCCGGTTATGTAGAGGGACAAGAGATAGATTTATTTGGTGAGATTGCTGGTATAGCTTTCAGTCCAGACACCGAGGCTCTATTTGTTGGCATTGCTGACCGCACCTATGGTAGCTTGTTGGAGTTTAACAGAAAACGTTGTAACCTCTACTTAGACTCCATTTA 1346 0.4183 MDQFNNDDLEYIVDDYDDFLEFEDDHIYEDNEPKRNSDYLDSDFEDDFEMTKPKTDTSALEAREGKDIQGIPWERLNYTRDKYRETRLKQYKNYENLSLSRDQLDKECLEVHKGNNFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRGKEVLNVVKPIVPTLKRPGFLAQPLSRVQISTMAVKENLMLAGGFQGELICKNLNQPGVTFCSKIATDDNAITNAVDVYRNHNGSLRVITANNDAQVRIFDAESLSCLGCFKYDWSVNNTSVSPDGKLFAILGDNAECLLADANTGKVTGNLRGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSLAVVKGRMGAIRSLKFTSDGRFLAMAEPADFVHILDSQSGYVEGQEIDLFGEIAGIAFSPDTEALFVGIADRTYGSLLEFNRKRCNLYLDSI 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02189 448 Gene3D - 186 431 IPR015943 GO:0005515
Bva12g02189 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 352 - -
Bva12g02189 448 PANTHER OS03G0386000 PROTEIN 1 448 - -
Bva12g02189 448 SMART WD40_4 310 349 IPR001680 GO:0005515
Bva12g02189 448 SMART WD40_4 224 266 IPR001680 GO:0005515
Bva12g02189 448 SMART WD40_4 353 392 IPR001680 GO:0005515
Bva12g02189 448 SMART WD40_4 269 307 IPR001680 GO:0005515
Bva12g02189 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515
Bva12g02189 448 ProSitePatterns Trp-Asp (WD) repeats signature. 336 350 IPR019775 -
Bva12g02189 448 Pfam WD domain, G-beta repeat 312 349 IPR001680 GO:0005515
Bva12g02189 448 SUPERFAMILY WD40 repeat-like 195 429 IPR036322 GO:0005515
Bva12g02189 448 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02189 Bva-Chr12 16877101 16882390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02189 236 429 Miscellaneous Gene Families AT5G08390 25.510 7.15e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02189 - - jre:108997195 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02189 12 16877101 16882390 Bva12g02189 12 16877101 16882390 ECH