Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02179 ATGATAGCAGGTCCGAGGCCGCTGGCTACTGCTCACTGCTCATATTCACTTCCATTCCCATCGCCAGTGCTGACTCGTAATCAAATGGCGTATTTGCCTGGTCTCCGCCATCTCATCCATCACATAAACATATACTGGTTGGTACCACCACGACGCCCGGCCATAACTCTATCCTTATCCCATCTGCCGAAGCATTGCCCTCGGTTCCACTCTCTACTTTCCTCCACTCCCAAAAATTCAACCTTCAAAACTCCTTTTCCCCGTGCCATCTCCAAAGAGAATCACACGCTGCTTCTCAAGGAAGATGAGCGCTTGCCGAAGTCGGTTTTGCCTGCTCAGAACACGAGCACAATTGCGGCCATTGTCACATCCTTAGGGGGTCCACCTGGTGCCGTCGGCATCGTTCGGCTGTCCGGTCCCTCTTCGGTGGCTATTGCCGCTCGTGTATTTCGACCTTCGAAGAAAGGGAACAAgagttttgtttcttctacGTGGCAGCCCACCTGCCATGTTGTCGAGTATGGTGTCGCGTTGGATTCGAATGGGAATGTCATAGACGAGGTATTAGTGGTACCTATGTTGGCCCCAAGGTCGTACACTTGTGAAGATGTGATTGAGCTTCAATGTCATGGAAGTGAAGTATGTTTACGTCGTGTGTTGACAGCTTGTTTGGAAGCTGGAGCCAGACTTGCTGAACCAGGTGAATTTACTCTTCGCGCTTTTCTGAATGGCCGCTTAGATCTCTCCCAAGCTGAAAATGTTGGAAGACTTATAACAGCCAAATCTGTGGCTGCTGCTGATGCAGCTCTGGCGGGAATTCAGGGtggtttctcttctcttgtgAGATCTCTTAGAATGCAGTGCATTGAGTTGCTTACAGAGATTGAAGCTCGTTTAGATTTTGATGATGAGATGCCACCACTAGATTTGAATCTGATTATGGATAAAATACATATCATGTCCCGTGATGTTGAAAAAGCATTGGAGACGGCAAATTATGACAAGCTTCTGCAATCTGGACTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGGAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCTATTGTTACTGAAATTGCTGGAACCACTCGTGACGTGATTGAAGCAAGTGTTAGCGTCCATGGTATACCTATAACCCTTCTTGATACTGCAGGCATCAGGGATACTGATGACATTGTAGAAAAGATTGGTGTGGAGAGATCTGAAGCAGTTGCTATGGGTGCTGATTTAATTATCATGACTGTCAGTGCTGTCGAGGGGTGGACAACTGAAGATGCTAAACTTCTAGAAAGGATTCAATCTATTAAGAGATCAATGGGACCCTCGACACCCGCAATCCTTGTGATCAACAAGATAGACGCTGCTTCTTGTGCTGAGACTGATTGGGTCAAAGGATGTGACAACTTTTTCAGTAAATATGTGTTTACGTGTGCCATCACGGGTCAAGGATTACAAGAATTGGAGAAGGCAGTATCAGAGATGGTGGGTCTTGACAGGATTCCTACTGGGGGACGCAGATGGACTGTAAACCAGAGACAATGCGAACAACTTGTTCGGACAAAAGAAGCTTTTGTAAGGTTAAAACAATCAATAGAGGAGGAACTTCCGCTGGATTTTTGGACAATTGATTTGAGGGATGCCGCTTTGGCCCTTGGACAGATAAGTGGAGAAGATATATCAGAAGAGGTTTTGTCCAATATCTTTGGCAAGTTCTGCATTGGTAAGTA 1763 0.4538 MIAGPRPLATAHCSYSLPFPSPVLTRNQMAYLPGLRHLIHHINIYWLVPPRRPAITLSLSHLPKHCPRFHSLLSSTPKNSTFKTPFPRAISKENHTLLLKEDERLPKSVLPAQNTSTIAAIVTSLGGPPGAVGIVRLSGPSSVAIAARVFRPSKKGNKSFVSSTWQPTCHVVEYGVALDSNGNVIDEVLVVPMLAPRSYTCEDVIELQCHGSEVCLRRVLTACLEAGARLAEPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRMQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHIMSRDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVHGIPITLLDTAGIRDTDDIVEKIGVERSEAVAMGADLIIMTVSAVEGWTTEDAKLLERIQSIKRSMGPSTPAILVINKIDAASCAETDWVKGCDNFFSKYVFTCAITGQGLQELEKAVSEMVGLDRIPTGGRRWTVNQRQCEQLVRTKEAFVRLKQSIEEELPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02179 587 Gene3D tRNA modification GTPase MnmE domain 2 246 587 IPR027368 -
Bva12g02179 587 TIGRFAM small_GTP: small GTP-binding protein domain 341 468 IPR005225 GO:0005525
Bva12g02179 587 Hamap tRNA modification GTPase MnmE [mnmE]. 116 587 IPR004520 GO:0003924|GO:0005525|GO:0006400
Bva12g02179 587 Pfam MnmE helical domain 248 584 IPR025867 -
Bva12g02179 587 Gene3D Probable tRNA modification gtpase trme; domain 1 105 245 IPR027266 GO:0005515
Bva12g02179 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 503 IPR027417 -
Bva12g02179 587 Gene3D - 341 515 IPR027417 -
Bva12g02179 587 Pfam 50S ribosome-binding GTPase 342 463 IPR006073 GO:0005525
Bva12g02179 587 Pfam GTP-binding protein TrmE N-terminus 117 245 IPR018948 -
Bva12g02179 587 CDD trmE 338 508 IPR031168 -
Bva12g02179 587 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 340 508 IPR031168 -
Bva12g02179 587 PANTHER TRNA MODIFICATION GTPASE GTPBP3 115 587 - -
Bva12g02179 587 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 115 587 - -
Bva12g02179 587 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 130 587 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02179 Bva-Chr12 16810221 16814558 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02179 K03650 - qsu:112038070 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02179 12 16810221 16814558 Bva12g02179 12 16810221 16814558 ECH