Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02172 ATGGCGTTTCGCTTTCTGCACTGTTTGTTACTTGTCAATGTTCTTGTGGACGGGTCGATTGCACTCACATTTTCTTCGAAGCTCATACACCGGTATTCGGACGAGGCTAAAGCTCACTGGGTATCCAGGAATAAGAATGTTTCGGTGGAATCGTGGCCCAAGAGGGACAACTCCAAGTATTTTAGATTGCTCTTGAGCAGTGATTTGACACGCCAGAAAATGAAGCTCTCCCCTCGGTACAACCTTCTGTATCCTTCTCAGGGAAGTCAGACGCTGTTCTTCGGAAATGTGTTTGATTGGTTGCATTACACATGGATCGATATAGGGACTccaaatgtttcttttcttgttgcgCTGGATACTGGGAGTGATCGGCTTTGGGTCCCTTGTGATTGCATAGAATGCGCACCCTTGTCTGCCGGTAACTACGAAGGATTGGATAGGGATCTGAGTGAGTATAGCCCATCATTATCAAGCACTAGCAGACATCTACCTTGCAGCCATCAGTTGTGTGATCAGGGTCCCAATTGTAAAAGTCCTAAGGAGCCTTGCCCTTATATTGCTCAGTACTTATCCGAGAACACCTCAAGTTCCGGATTTCTTATTGAAGACAAATTACATTTGTCATCAGGTGGCAGACATTCAACACAAAGTTCTGTGCAAGCCTCAATCATTTTAGGTTGTGGTAGGAAGCAAAGCGGTGGTTATTTAGAAGGAGCTGCTCCCGATGGTGTTATGGGGCTGGGACCTGGCAGCATTTCAGTTCCAAGTTTGCTGGCAAAGGCAGGACTTATTCAGGATTCTTTCTCGatttgttttaatgaaaattattctgGGAGAATTCTCTTTGGTGACCAAGGGCACGCCCAACAACAATCTACTCCATTCTTGCCTGTAGATGGAGACTTTATTGCGTATATTGTTGGAGTGAAGAGCTTCTGTGTTGGGAATTCCTGTCTCAAGCAAACTGGATTTCAAGCACTTATTGACAGTGGCACTTCTTTCACATATCTCCCCAGTGAAGTTTATAAAAGGGTTGTTTCGGAGTTTGACATACAAGTTAATGCAAGACGGATTATGATCCAACAATACCCATGGGAGTACTGCTATAATGTCAGTTTGCAGGAGTTGACTAACATTCCCAAAGTAGAACTCACGTTTGCTAAGAATCAAACTTTCCTGATTCAAAATCCCTTGTTTTATCATCCTGTCAATCAGGAACATACTCTTATTTGTTTAACTGTAATACCAACTGATGACGACTATGGTACCATTGGACAGAACTTCCTGATAGGCTATCACATGGTCTTTGATAGGGAAAATCTGCGGTTTGGTTGGTCTAGTTCGAACTGTCAAGATAACATGGGAGACACAGCAAATTTCACTTCACCATCGAACGAAGGATCGTCAAACCCTCTACCAGCGAATCAGCAGCAGAGTATCCCTAATTCAACTGCTGTATCACCTGCTGTCGCAGGAAAGGCTTCATCCAAACCCTCTGTAGCCACACCCAGACCCATTCCCCCTTGCCATTCATTATGTTCTCTCTCACTAGTGTGCCTCCTTTTCTTCTGCATGTCTCGCTG 1586 0.4338 MAFRFLHCLLLVNVLVDGSIALTFSSKLIHRYSDEAKAHWVSRNKNVSVESWPKRDNSKYFRLLLSSDLTRQKMKLSPRYNLLYPSQGSQTLFFGNVFDWLHYTWIDIGTPNVSFLVALDTGSDRLWVPCDCIECAPLSAGNYEGLDRDLSEYSPSLSSTSRHLPCSHQLCDQGPNCKSPKEPCPYIAQYLSENTSSSGFLIEDKLHLSSGGRHSTQSSVQASIILGCGRKQSGGYLEGAAPDGVMGLGPGSISVPSLLAKAGLIQDSFSICFNENYSGRILFGDQGHAQQQSTPFLPVDGDFIAYIVGVKSFCVGNSCLKQTGFQALIDSGTSFTYLPSEVYKRVVSEFDIQVNARRIMIQQYPWEYCYNVSLQELTNIPKVELTFAKNQTFLIQNPLFYHPVNQEHTLICLTVIPTDDDYGTIGQNFLIGYHMVFDRENLRFGWSSSNCQDNMGDTANFTSPSNEGSSNPLPANQQQSIPNSTAVSPAVAGKASSKPSVATPRPIPPCHSLCSLSLVCLLFFCMSR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02172 528 Gene3D Acid Proteases 285 462 IPR021109 -
Bva12g02172 528 CDD pepsin_like 106 446 IPR034164 -
Bva12g02172 528 Gene3D Acid Proteases 94 284 IPR021109 -
Bva12g02172 528 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 6 474 - -
Bva12g02172 528 SUPERFAMILY Acid proteases 96 452 IPR021109 -
Bva12g02172 528 Pfam Xylanase inhibitor C-terminal 323 447 IPR032799 -
Bva12g02172 528 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 327 338 IPR001969 GO:0004190|GO:0006508
Bva12g02172 528 MobiDBLite consensus disorder prediction 457 491 - -
Bva12g02172 528 Pfam Xylanase inhibitor N-terminal 103 285 IPR032861 -
Bva12g02172 528 MobiDBLite consensus disorder prediction 457 504 - -
Bva12g02172 528 PRINTS Pepsin (A1) aspartic protease family signature 327 338 IPR001461 GO:0004190|GO:0006508
Bva12g02172 528 PRINTS Pepsin (A1) aspartic protease family signature 108 128 IPR001461 GO:0004190|GO:0006508
Bva12g02172 528 PRINTS Pepsin (A1) aspartic protease family signature 423 438 IPR001461 GO:0004190|GO:0006508
Bva12g02172 528 ProSiteProfiles Peptidase family A1 domain profile. 102 447 IPR033121 -
Bva12g02172 528 PANTHER ASPARTYL PROTEASES 6 474 IPR001461 GO:0004190|GO:0006508
Bva12g02172 528 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 117 128 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02172 Bva-Chr12 16769637 16774464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02172 95 451 Miscellaneous Gene Families AT1G44130 28.010 2.64e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02172 - - lang:109359439 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02172 12 16769637 16774464 Bva12g02172 12 16769637 16774464 ECH