Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02169 ATGGGTTCTATCTTGAGTATGGCTAGTACAAAGTCTGATAGAAACGACTGTGATGAGGTCTCTCAGAATGAGACCTGCAAGAGGCGAAGAATGTCATCTATCTTTGATGAGGAAAGTTCAAGATTAATTCCAAGTCTCCCTGATGAGGTATCACTTCAGATTATTGCTAGAATTCCTAGAATTTGCTACTTCAATATGAGACTGGTATCAAGGAAGTGGAAAGCAACTGTCATGAGTTCTGAACtatataaagtaagaaaagaaCTTGGAACAACTGAAGAGTGGGTATATCTGTTGATTAAGTTTGGAGAAGATAAGTTTTTGTGGCATGCTCTAGACCCGCTTTCTCAGAAATGGCAGAGGCTGCCTACTATGCCCAATGATGTTAACGAAGAAGAATCTAGAAAGGGTTCTTCCAGGTTTTGGATGTGGAACATGGTGGAGGGTATTAGAGGTTTGCTTGGACAGAAGGAGGCAATGGATGAAATGCCCTTTTGTGGTTGTGCCATTGGAGCTCTTGATGGGTGCCTCTACGTTCTTGGTGGATTCTGTAAAGCTTCAACCATGAGATGTGTGTGGCGATTTGACCCGATTCAAAATACGTGGAACAAGGTGACTTCTATGTCTACAGCTAGAGCATATTCCAAGACAGGAATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGACTGATTCCTCTTCAGTCTGCTGAAGTTTTTGACCCCTCTACTGATACATGGTCTAATGTACCAAGCATGCCATTCTCAAGAGCTCGCTTCCTCCCCACTGCTTTTTTGGCTGACATGCTAAAGCCTATTGCCACAGGATTGACCTCGTACATGGGTAAATTGTGTGTTCCTCAAAGTTTATATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGAAACAAATTCATGGATGGAAATGCCAGCTGGGATGGGTGAGGGTTGGCCGGCAAGGCAAGCGGGTACAAAATTGAGTGTTGTGGTGGATGGCGAATTATATGCTTTTGATCCCTCTAATTCTCAGGATAGTGGAAAGATCAAGGTATATGATCAAGGAGAAGATGCCTGGAAAGAAGTCATTGGAAAAGTCCCTATCTATGATTCTACTGATTCAGAGTCTCCATATTTACTTGCTGGTTTCCATGGAAAGCTTCACGTCATTACAAAAGATGCTAATCATGATATTGCTGTTATGCGGGCTGACCTGCGCAAGGATTTGAATTCATCACCATCAACCTCAACTACTCTACCACGCAGTTCCTTGCGCGAATTTACTGAACCGGTTACAGAATCGGATGCAGTTGTTTGGAGAGTCGTCGCCAATAGGGATTTTGGACCAGTTGAATTAGTCAGTTGCCAAGTTATTGATATATA 1412 0.4228 MGSILSMASTKSDRNDCDEVSQNETCKRRRMSSIFDEESSRLIPSLPDEVSLQIIARIPRICYFNMRLVSRKWKATVMSSELYKVRKELGTTEEWVYLLIKFGEDKFLWHALDPLSQKWQRLPTMPNDVNEEESRKGSSRFWMWNMVEGIRGLLGQKEAMDEMPFCGCAIGALDGCLYVLGGFCKASTMRCVWRFDPIQNTWNKVTSMSTARAYSKTGILNNKLYVVGGVSQGQAGLIPLQSAEVFDPSTDTWSNVPSMPFSRARFLPTAFLADMLKPIATGLTSYMGKLCVPQSLYSWPFFVDVGGEIYDPETNSWMEMPAGMGEGWPARQAGTKLSVVVDGELYAFDPSNSQDSGKIKVYDQGEDAWKEVIGKVPIYDSTDSESPYLLAGFHGKLHVITKDANHDIAVMRADLRKDLNSSPSTSTTLPRSSLREFTEPVTESDAVVWRVVANRDFGPVELVSCQVIDI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02169 470 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Bva12g02169 470 Pfam F-box domain 44 83 IPR001810 GO:0005515
Bva12g02169 470 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 470 - -
Bva12g02169 470 SUPERFAMILY Kelch motif 96 400 IPR015915 GO:0005515
Bva12g02169 470 SMART fbox_2 46 86 IPR001810 GO:0005515
Bva12g02169 470 SUPERFAMILY F-box domain 42 84 IPR036047 GO:0005515
Bva12g02169 470 SMART kelc_smart 223 273 IPR006652 GO:0005515
Bva12g02169 470 SMART kelc_smart 176 222 IPR006652 GO:0005515
Bva12g02169 470 Gene3D - 80 378 IPR015915 GO:0005515
Bva12g02169 470 MobiDBLite consensus disorder prediction 1 22 - -
Bva12g02169 470 Pfam Kelch motif 211 260 IPR006652 GO:0005515
Bva12g02169 470 Pfam Kelch motif 164 209 IPR006652 GO:0005515
Bva12g02169 470 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02169 Bva-Chr12 16757041 16760335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02169 36 258 Miscellaneous Gene Families AT4G33900 25.108 1.06e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02169 - - gmx:100806691 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02169 12 16757041 16760335 Bva12g02169 12 16757041 16760335 ECH