LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02156	ATGGATTTATCGAGTGCTCAACCGGGTCTATCTCTTGGGTTAACCACCCACGTATCATCACCGACTTTGCCAAGCCCTGTTAGTGATAATTCGTATTCCCTCCATGTGAATTCGAGCTTTCGCGGTTCCTCCAGTCCAATTCCCTCAGCTCCGTTGCAGTTATTGGAGGAGAAAGATGAGAGGGTTAGGGCCAACAACGGAGAAGAGCAAGTAGAAGATGAGATGATTAGCTTCATGGGGCGCCCTTTGTGCGTGAAGAGGCAGATAGACGGGCAATCAAACTTCTGTTCGAATCCTTCTAAACGGCTTGCGGTGGATTCGGGCCCTGAGGCAAGGCGAGCCTCCGTGCGGGGTTGGGGAAACCAGCCACTGGAGGCGGCGGACCCTGAGATTAGTGAAAtaatgaagaaggaaaagcaGAGACAGTTTAAAGGAATCGAGTTGATTGCTTCCGAGAATTTTGTGTGCAGGGCTGTGATGGAAGCTCTGGGTAGTCATTTGACCAACAAATACTCTGAGGGGATGCCTCGAGCGAAGTACTATACGGGTAATGAGCACATCGATCAAATAGAGTTGCTTTGCTGTAAGCGTGCATTGGCTGCGTTTGATCTTGATTCCAACATATGGGGCGTGAATGTTCAGCCTTATTCATGTTCTTCTGCGAACTTTGCTGTATTTACCGGTCTTTTGCTTCCGGGCGATCGAATAATGGGTCTGGATTCGCCCTCTGGTGGCCATTTGAGTCATGGATATTATACTCAGAGTGGGAAGAAAGTTTCCGCTGCATCAATATTCTTCGAAACTCTCTCCTATAAAGTCAATCCCCAAACAGGTTACATAGACTATGAAAAGCTTGAAGAAAAGGCACTTGATTATCGCCCCAAGATACTTATTAGTGGTGGGAGTGCTTATCCCAGAGAATGGGATTATGCGAGGTTCAGGAAGATTGCAGATAAATGTGGGGCGGTTTTGATGTGTGACATGGCTCAGATTAGCGGTCTTGTAGCAGCTAAGGAAGTTGCTAGCCCATTTGATTACTGTGATATTGTTACATCAACGACTCACAAAAGTCTCCGAGGTCCAAGAGGAGGTATTATCTTCTACAGGAGAGGGACACAATCGGGGAAACAAGGCTTGGTTCATGGAGATGATAGTAGTGATTATGGTTTTGAGGAAAAGATAAACTTTGCTTTATTTCCATCATTACAAGGAGGTCCTCACAACAATCACATTGCTGCTCTTGCCGTAGCCTTAAAAGAAGTTGCATCTCCACACTACAAAGCATATATGCAACaggtgaaaaaaaatgcacaGGCTTTAGCATGTGCTTTGTTGAGAAGAAAATGCAGATTGGTGACTGGGGGTACTGACAATCATTTGTTGCTGTGGGATCTAACTGCTCTCGGCTTAATTGACAGGAATTATGAGAAGGTCTGTGAGGCGTGTCACATCACTGTTAACAAATGTGCCATTAATGGTGTTTCTCCTGGAGGAGTGAGGATCGGTACTCCTGCAATGACATCAAGAGGTTGTTTAGAGGATGATTTTGAGATCATGGCTGATTTTCTTCTTAGGGCAGCTCAGATTACCAACAATATACAAAGGGAACATGGAAAATTATACAAAGATTTTCTCAAAGGTCTTCATAATAACAAAGACATTATTGAGCTCAGAACCCGTGTTGAGAACTTTGCTTCCCAGTTTGCGATGCCAGGTTTCgacatttg	1727	0.4401	MDLSSAQPGLSLGLTTHVSSPTLPSPVSDNSYSLHVNSSFRGSSSPIPSAPLQLLEEKDERVRANNGEEQVEDEMISFMGRPLCVKRQIDGQSNFCSNPSKRLAVDSGPEARRASVRGWGNQPLEAADPEISEIMKKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPRAKYYTGNEHIDQIELLCCKRALAAFDLDSNIWGVNVQPYSCSSANFAVFTGLLLPGDRIMGLDSPSGGHLSHGYYTQSGKKVSAASIFFETLSYKVNPQTGYIDYEKLEEKALDYRPKILISGGSAYPREWDYARFRKIADKCGAVLMCDMAQISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIIFYRRGTQSGKQGLVHGDDSSDYGFEEKINFALFPSLQGGPHNNHIAALAVALKEVASPHYKAYMQQVKKNAQALACALLRRKCRLVTGGTDNHLLLWDLTALGLIDRNYEKVCEACHITVNKCAINGVSPGGVRIGTPAMTSRGCLEDDFEIMADFLLRAAQITNNIQREHGKLYKDFLKGLHNNKDIIELRTRVENFASQFAMPGFDI	575

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02156	575	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE 7	80	575	-	-
	Bva12g02156	575	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE	80	575	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Bva12g02156	575	Gene3D	-	153	431	IPR015421	GO:0003824
	Bva12g02156	575	Pfam	Serine hydroxymethyltransferase	124	522	IPR039429	-
	Bva12g02156	575	ProSitePatterns	Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.	348	364	IPR019798	GO:0030170
	Bva12g02156	575	CDD	SHMT	128	533	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Bva12g02156	575	Gene3D	Aspartate Aminotransferase, domain 1	128	571	IPR015422	GO:0003824
	Bva12g02156	575	SUPERFAMILY	PLP-dependent transferases	115	574	IPR015424	-
	Bva12g02156	575	MobiDBLite	consensus disorder prediction	1	28	-	-
	Bva12g02156	575	Hamap	Serine hydroxymethyltransferase [glyA].	123	572	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02156	Bva-Chr12	16692179	16696520	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02156	K00600		-	jre:108984655	882.093

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva12g02156	12	16692179	16696520	Bva12g02156	12	16692179	16696520	ECH