Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02153 ATGGAAAATACCGACGTTTTCTTGGGCTTACATGACTTCCTCGAGCGCATGCGCCAACCCTCCGCCGCCGATTTGGTCAAAGCAATCAAAAGCTTTATCGTGTCATTTTCAAAGAATGCACCTGATCCAGATAGAGACAGTGCCGCAGTACAGGAGTTTCTTGCTAATATGGAAGCAGCTTTTAGGGCTCATCCACTTTGGGCTGGCTGCTCTGTGGAGGAGCTTGAGAGTGCTGGTGAGGGGCTGGAGAAATATGTGATGACCAAGTTATTTACCCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGATCAAGTTTCTGAAAAGATGGCTTTGATTCAACAGTTTATTCGACCAGAAAATCTAGATATAAAGCCAACATTTCAGAATGAAACATCATGGTTGCTTGCACAGAAAGAATTACAAAAGATTAACATGTACAAGGCACCCAGAGACAAACTTGTGTGTATTGTGAATTGTTGCAAGGTTATCACTAACTTGCTGGTTAATGCCTCTATTGCTTCAAATGAGAATCCTCCTGGAGCTGATGAATTTCTTCCTGTGTTAATTTACGTTACTATAAAGGCAAATCCACCACAGCTTCACTCAAATCTAGAGTATATACAAAGATTTAGACATCAATCTCGATTGATTGGGGAAACAGCATACTTTTTTACAAACATACTCTCAGCTGAGTCCTTCATCTCAAACATTGATGCCAAAGCCCTTTCACTAGATGAAACAGAGTTTGAGAGAAATATGGAATCTGCCCGTGCTCTTCTTTCTGGGCTTTCAACTGATTTGCAAGATCAGAAAAATCCTTCGAATGATATTAAGGAGCCATCATTAGGCACCAAATCATCTGAAGCCAAATCTGATAGTAAGAAAGTAACTTTCACAGATGAGTTGCCGATCACAAAAGTTCCATCCCTCGCGGATTTGGAGAATAAAGGAGCAACTATGATTCTGAAGGAGGATCAGGTGAACGAAGTTTTTAAGGAGTATCCATATTTCTTTGCTCTTTCAGGTGAGCTAACAGTCAGTGATGTGGAAGATCTGCTAAACAATTACAAACAACTTGTTTTCAAGTATGTATGTCTTTCAAATGGGTTAGGTGTTACTCCTGCACCTTATCCTCCATTCAGTTCACAAAATAATATCCAACATCATGCTGAAACTACAATAGAGTCTTCAGATAGTGGACCTGTAGTGTCAGATGATAAGTCACAAAAATCTACTCATAAGACAGAGGATAGTTCAAGTACAGTTTCAGTTATTGAGGAAAAAATTTTTTG 1301 0.3951 MENTDVFLGLHDFLERMRQPSAADLVKAIKSFIVSFSKNAPDPDRDSAAVQEFLANMEAAFRAHPLWAGCSVEELESAGEGLEKYVMTKLFTRVFASLPDDVKLDDQVSEKMALIQQFIRPENLDIKPTFQNETSWLLAQKELQKINMYKAPRDKLVCIVNCCKVITNLLVNASIASNENPPGADEFLPVLIYVTIKANPPQLHSNLEYIQRFRHQSRLIGETAYFFTNILSAESFISNIDAKALSLDETEFERNMESARALLSGLSTDLQDQKNPSNDIKEPSLGTKSSEAKSDSKKVTFTDELPITKVPSLADLENKGATMILKEDQVNEVFKEYPYFFALSGELTVSDVEDLLNNYKQLVFKYVCLSNGLGVTPAPYPPFSSQNNIQHHAETTIESSDSGPVVSDDKSQKSTHKTEDSSSTVSVIEEKIF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02153 433 MobiDBLite consensus disorder prediction 395 409 - -
Bva12g02153 433 SMART vps9_2 135 254 IPR003123 -
Bva12g02153 433 MobiDBLite consensus disorder prediction 267 296 - -
Bva12g02153 433 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Bva12g02153 433 Gene3D VPS9 domain 99 265 IPR037191 -
Bva12g02153 433 Gene3D - 17 97 - -
Bva12g02153 433 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Bva12g02153 433 PANTHER BNAC09G47180D PROTEIN 1 386 - -
Bva12g02153 433 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Bva12g02153 433 MobiDBLite consensus disorder prediction 418 433 - -
Bva12g02153 433 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Bva12g02153 433 MobiDBLite consensus disorder prediction 267 285 - -
Bva12g02153 433 MobiDBLite consensus disorder prediction 395 433 - -
Bva12g02153 433 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 386 IPR045046 GO:0005085|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02153 Bva-Chr12 16669550 16673200 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02153 K20131 - gmx:100810958 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02153 12 16669550 16673200 Bva12g02153 12 16669550 16673200 ECH