Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02144 ATGGCTCAATCTTGTCCTCTCTCTGCTGAAATTGAAACTGTGACTCGTGTTCTGAGACTTGTGGAGGCATTCAGAGCATTTGATGGAGACAATGATGGGCACATAAGCGTGGCGGAGCTGGGCGGAATCATGGCGTCACTTGGGTACAATGCTAGTGAGCAGGAGGTGAGGGCGATGATGCAACAAGGGGACAAAAACAGGGACGGCTTGCTGAGCATAGATGAGTTCTTGGAGCTGAACACGAAGGATTTGCAGTCGGGTGATCTTGCCAATTTCCTCAGAACAGCATTTCAAGCTTTGGATGAAGATGGGAATGAGGTTTTGATGGCGGAAGAACTACACGAGCTTATGGCCAATTTGGGCCCTAATTTGTCTCTTGAGAATTGCAATAGCATCGTTGCTTCTCTTGATGTCAATGGAGATGGAGTTGTGGACATGGACGACATTCGTCTCATTGTCAATTGTCTCCCATA 473 0.4757 MAQSCPLSAEIETVTRVLRLVEAFRAFDGDNDGHISVAELGGIMASLGYNASEQEVRAMMQQGDKNRDGLLSIDEFLELNTKDLQSGDLANFLRTAFQALDEDGNEVLMAEELHELMANLGPNLSLENCNSIVASLDVNGDGVVDMDDIRLIVNCLP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02144 157 Gene3D - 14 155 - -
Bva12g02144 157 SMART efh_1 92 120 IPR002048 GO:0005509
Bva12g02144 157 SMART efh_1 19 47 IPR002048 GO:0005509
Bva12g02144 157 SMART efh_1 128 156 IPR002048 GO:0005509
Bva12g02144 157 SMART efh_1 55 83 IPR002048 GO:0005509
Bva12g02144 157 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Bva12g02144 157 ProSiteProfiles EF-hand calcium-binding domain profile. 124 157 IPR002048 GO:0005509
Bva12g02144 157 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 10 153 - -
Bva12g02144 157 Pfam EF-hand domain pair 93 150 IPR002048 GO:0005509
Bva12g02144 157 Pfam EF-hand domain pair 20 78 IPR002048 GO:0005509
Bva12g02144 157 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Bva12g02144 157 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Bva12g02144 157 SUPERFAMILY EF-hand 13 153 IPR011992 -
Bva12g02144 157 CDD EFh 19 79 IPR002048 GO:0005509
Bva12g02144 157 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Bva12g02144 157 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Bva12g02144 157 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Bva12g02144 157 PANTHER CALCIUM BINDING PROTEIN 10 153 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02144 2 153 EF-hand Containing Proteins AT1G24620 36.184 5.12e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02144 - K02183 gmx:100782291 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02144 12 16614498 16615132 Bva12g02144 12 16614498 16615132 ECH