Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02139 ATGGCGTCTTCAGCTTTGGAAAGCAATTCATCTTCTACACTGGTTTTATGCGGAAAGTCAGTgtcagaaaatgaaattgctGAAGCTATTAAAAGAAGTAACAGCTTGAAGCTTCCTGACAATGGCGATATATCGATTCTTTTGCAATCGGAATTGGAGAAACCCATGAAAGAAGAGAACTTTGAATTTGACTTGTTTCTGAGTTCTCTTTCCACCGATAAGTTTGGCAGGTTACTGATTTGGTCTCCACGGTTGTCTTCAACTCATGATGTGGTTTCCCACAACTTTTGTGAGCTTCCCGCTGGTACAGTGTGTGTTGCTGATGTTCAGATGAAGGGAAGAGGCCGGTCAAAGAATATTTGGGAGTCTCCATTGGGGTGcctcctattttcttttactctaCAAATGGAGGATGGGCGAGTAGTTCCTTTAGTACAGTATGTCGTTTCCCTGGCTATAACAGAGGCAATAAAAGATATCTGTGATAAAAACggCTTGCCATGTGTTGATGTTAAAATCAAGTGGCCAAACGATCTTTACTTAAATGGCCTTAAAGTTGGAGGCATTCTGTGCACTTCAACATATAAATCGAAGAAGTTCAATGTTAGTGCTGGTATAGGGTTGAATGTCAACAATGAGAAGCCAACAACATGCTTAAACACTATCCTGAGAGAACTTTCGGTGGAGGCTTACCAATTTAGAAGAGAAGATGTTCTTGCAgcattttttaacaaatttgagaaattttatgatCTGTTTGTTAATCAAGGATTTCAGACCCTAGAGGAGTTATATTATAAGACTTGGTTGCACAGCGGACAGAGAGTAATCGtacaagaaaagaatgagGACAAGGTAGTTCAACATGTGGTAACCATTCAGGGCTTGACCTCCTCAGGATTTTTGTTGGCCGTTGGTGATGACAATCAAATGTGTGAGCTCCACCCTGATGGCAACAGCTTTGACTTTTTCAAGGGACTGGTCAGAAGAAAACTTGAATG 1001 0.3796 MASSALESNSSSTLVLCGKSVSENEIAEAIKRSNSLKLPDNGDISILLQSELEKPMKEENFEFDLFLSSLSTDKFGRLLIWSPRLSSTHDVVSHNFCELPAGTVCVADVQMKGRGRSKNIWESPLGCLLFSFTLQMEDGRVVPLVQYVVSLAITEAIKDICDKNGLPCVDVKIKWPNDLYLNGLKVGGILCTSTYKSKKFNVSAGIGLNVNNEKPTTCLNTILRELSVEAYQFRREDVLAAFFNKFEKFYDLFVNQGFQTLEELYYKTWLHSGQRVIVQEKNEDKVVQHVVTIQGLTSSGFLLAVGDDNQMCELHPDGNSFDFFKGLVRRKLE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02139 333 Pfam Biotin protein ligase C terminal domain 271 326 IPR003142 GO:0036211
Bva12g02139 333 TIGRFAM birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 82 303 IPR004408 GO:0004077|GO:0036211
Bva12g02139 333 CDD BPL 79 253 IPR004408 GO:0004077|GO:0036211
Bva12g02139 333 Gene3D Bira Bifunctional Protein; Domain 2 67 268 IPR045864 -
Bva12g02139 333 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 64 254 IPR004143 GO:0036211
Bva12g02139 333 SUPERFAMILY Class II aaRS and biotin synthetases 65 269 IPR045864 -
Bva12g02139 333 Pfam Biotin/lipoate A/B protein ligase family 82 209 IPR004143 GO:0036211
Bva12g02139 333 PANTHER BIOTIN PROTEIN LIGASE 8 331 - -
Bva12g02139 333 PANTHER HOLOCARBOXYLASE SYNTHETASE (BIOTIN-(PROPRIONYL-COA-CARBOXYLASE (ATP-HYDROLYSING)) LIGASE) 8 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02139 Bva-Chr12 16570400 16574429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02139 K01942 - jre:109013665 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02139 12 16570400 16574429 Bva12g02139 12 16570400 16574429 ECH