Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02125 ATGAAAGATAGTGTAGAACCATCTGTGGTTGAGAAGTTTGATGTTGgggaaaaggagaagaagaagaaacggCGATCCCATCGTCGGTCCAAACAAAATTCTGCATCCTCAGATTGCTCGGGCAATAACAAAACACTTACACACGTGACAGCATCCGCAAGTAATTCCTTATTGAAGCAGCAGAACGCTTTTCCCCTTAATGAACAAGGATCATCCACAGCATCAAAAGTTGCTTTCATTTCAATGCCACCCATTCATATTAATGAACAATTAGATAATACCGATTTGCAAAATACACAAATGCACGGTGGAAGAATCTGTTCAAAATCATCTTGTGACCCAACTGCTTGTAGAGCTCCTTCAGGAATTTATACAAACAAGGATTCATTTCCTTCTGGTCAGACTGGGTTTTGTGTGCAGAGAAGTTATTTTAGCTCACATTGGTCTATGGACGCCATTGAGAAGGCATTAGAGaaGGGTGACGTTTTTAAAGCTCTCTTTCGTGTCAATGCTCACAATAGACTTGAGGCTTACTGTAAAATTGATGGAGTTCCAATAGATGTCCTCATTAGTGGAATTTCTGCCCAGAATAGAGCTGTGGAAGGTGACATTGTTGCAATTAAGATTGATCCTCTATCATTGTGGACAAAAATGAAAGGATCCAATGGGACTTGTAACATTACTGTATCAGTTGTAGAAGATTCTAACCTACTCACTGAAGATAATGAAATGTCATGTAATATGTCCAAAGCAAAAGGTAAGGTGGACTCCATTGATGAGTCTGCCCAGTACGGAAGTTGCCCTCGTCAAAACAAGTTGGAAGCTGATAACTACACTAGCCCTTATAGAAGTTGCCCTCTACCTGAAGAAAGATATTGCTACGATGAGAATGCTTCCAACTTACATTCACTTGGACTGGTGAATAATGATGGTCTTGATGGACGGCACTGTGCTGCTTCTTGTGGACAGCATGAAGTTATTAATTCAGTTGATAAGATGTGTTCCGTGGTTAGTTCCTTCCCTTCCAAAAGACCAACTGGCAGGGTGGTTGCCATTCTTGAGAGGTCTCTACGTCGAGAGGCTGTTGTTGGTTATCTTAATGTTAAGCAGTGGGTTTCTTACAGGGacataaacagaaaagatgccaagaaagtaaaaaatttggtTCCTGAGGATGAGTATGTCCAGCTAACACCAATTGATCCAAAGTTTCCAAAACTAGTGCTTCCTGCTAGAGATTTGCCAGACTGCCTAAAGAAAAGGCTACAAAGTGGGGATATGACAGTTGAAATGGATCTGGTAGCTGCACAATTTGATGATTGGGTTGAGGATAGTCCTTTTCCTCAAGCTCATGTGTTACATGTGTTTGGACGAGGTGGGGAAGTTCAGCCACAATTAGATGCAATCTTGTTTCAAATTGCAATCaatttttctgaattttcaCCTGAAGCTCTATACTGCCTTCCACATGTTCCTTGGGAGGTTCCAGTGAAGGAATTCAACACTAGAATGGATCTTAGAAATGTGTGCATATTTACTATTGATCCTTCAGCTGCCACTGATCTGGACGATGCATTGTCGGTTGAGAAACTACCCAATGGAAACTTTAGAGTTGGTGTCCACATTGCTGAtgtatcatattttgttttacctGACACAGCCTTAGATCAAGAGGCCCAGTCTAGGTCAACAAGCGTCTATATGTTGCAAAGAAAGTTACCAATGTTGCCACCATTATTTTCAGAGGATATAGGTTCACTTAATCCTGGGGTAGATCGACTGGCTGTTACCATGTTCCTGGACATCAACCATGTTGGTGATGTTGTAGACCGTTGGATTGGTCGTACTGTGATACACTCTTGTTGTAAGCTGTCATATGAGCATGCCCAAGACATCATCGATGGTGTTGGTGATACTGAAAATTCCAACATTGTGGGAGCTTACTATCCTAAGGTGCATGGCCACTTTGAATGGCCTGATATTGTTACGTCTGTCAAGAGtcttcataaaatttcaaaagttttaaaagataaGAGGTTTAATGATGGGGCTTTACGGCTTGAAATCTCCAAAGttgtttttctgtttgatGAATGTGGAATTCCATATGATAGTATGCTCTCTGGGCggaaagaatcaaattttcttgttgagGAATTTATGCTTTTGGCTAATAGAACAGCTGCTGAAGTTATCTGCAGAGCTTATCCTGAAGTTGCATTATTGCGAAGGCATCCTGAACCTAATATGAGGAAGCTGAGAGAGTTTGCAGCATTTTGTCTGAAACATGGTTTAGAATTGGACATATCTTCATCTGGCAGGATCCATCAGTCGTTAGAGCAGATCAGGGAAAAGGTTAAGGGTGACTCAACACTTTGCGATATTCTGATTAACTATGCTACGAAGCCAATGCAGTTGGCATCTTACTTCTGCAGTGGAGATTTAAAGGACAATGAAAATGAGTGGGGTCATTATGCATTGGCTGTCCCTTTTTACACTCATTTTACATCACCTCTGCGTCGATATCCAGATATTGTTGTTCATCGTACATTACTTGCTACTATAGAAGCTGAGGAATTGTATCTGAAGCATAAAAAGACATTGCTGGttaacaaaagagagaaagtgcAAAAAAGGTGTTTCACGGGCATCGACTTTGATAAAAATGCTTCAGAATCCATTGAAGGGAGGGAAGCTTTGTCAGCTGCAGCTTTGAAGCATAAACTTCCATGCAGTGAGTTACTCGTAGATGTGGCTGCTTATTGCAATGAGAGAAAGATAGCAAGTAGAAACGTTAAGGATGCCTATGATAAACTCTACATGTGGGTTCTCATAAAGAAGAAGGAGTTGTTACTGTCAGAAGCAAGAATATTGGGACTAGGCCCCAGATTCATGTCTATTTATATCCAGAAGCTAGCGATTGAGCGACGAATATATTATGATGAAGTTGAAGGATTGACTGTTGAGTGGCTTGATGTGACGTCCACTCTGGTGCTTAGTATGTGTCCTAATAGACGTGGATTTAGGAGAGGTAGCCTTGAAAAATGGAGGGCATTTGATGAAGTTGCGTTTCTGTCATGTCCGTGTGACCTGAAAATTGCAATGGATGTTTCAAAGGAGTACGACGGAGGGAAGGTGAGAGATGGTATAACTGCCGTGGACAGGGAGAATGGTTCCAAATCTGACAATTCAGAGGTTGATATTGAACCTGCAGTTTTCCCTTTAACAGTGCGTGTTCTTTCAACAATTCCAGTAGCACTTCATGCTGTTGGCGGAGATGATGGACCCCTTGACATTGGGGTGAGGCTGTACATGAGCTCATATTTCAAGTA 3332 0.395 MKDSVEPSVVEKFDVGEKEKKKKRRSHRRSKQNSASSDCSGNNKTLTHVTASASNSLLKQQNAFPLNEQGSSTASKVAFISMPPIHINEQLDNTDLQNTQMHGGRICSKSSCDPTACRAPSGIYTNKDSFPSGQTGFCVQRSYFSSHWSMDAIEKALEKGDVFKALFRVNAHNRLEAYCKIDGVPIDVLISGISAQNRAVEGDIVAIKIDPLSLWTKMKGSNGTCNITVSVVEDSNLLTEDNEMSCNMSKAKGKVDSIDESAQYGSCPRQNKLEADNYTSPYRSCPLPEERYCYDENASNLHSLGLVNNDGLDGRHCAASCGQHEVINSVDKMCSVVSSFPSKRPTGRVVAILERSLRREAVVGYLNVKQWVSYRDINRKDAKKVKNLVPEDEYVQLTPIDPKFPKLVLPARDLPDCLKKRLQSGDMTVEMDLVAAQFDDWVEDSPFPQAHVLHVFGRGGEVQPQLDAILFQIAINFSEFSPEALYCLPHVPWEVPVKEFNTRMDLRNVCIFTIDPSAATDLDDALSVEKLPNGNFRVGVHIADVSYFVLPDTALDQEAQSRSTSVYMLQRKLPMLPPLFSEDIGSLNPGVDRLAVTMFLDINHVGDVVDRWIGRTVIHSCCKLSYEHAQDIIDGVGDTENSNIVGAYYPKVHGHFEWPDIVTSVKSLHKISKVLKDKRFNDGALRLEISKVVFLFDECGIPYDSMLSGRKESNFLVEEFMLLANRTAAEVICRAYPEVALLRRHPEPNMRKLREFAAFCLKHGLELDISSSGRIHQSLEQIREKVKGDSTLCDILINYATKPMQLASYFCSGDLKDNENEWGHYALAVPFYTHFTSPLRRYPDIVVHRTLLATIEAEELYLKHKKTLLVNKREKVQKRCFTGIDFDKNASESIEGREALSAAALKHKLPCSELLVDVAAYCNERKIASRNVKDAYDKLYMWVLIKKKELLLSEARILGLGPRFMSIYIQKLAIERRIYYDEVEGLTVEWLDVTSTLVLSMCPNRRGFRRGSLEKWRAFDEVAFLSCPCDLKIAMDVSKEYDGGKVRDGITAVDRENGSKSDNSEVDIEPAVFPLTVRVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFK 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02125 1110 Gene3D - 139 233 - -
Bva12g02125 1110 MobiDBLite consensus disorder prediction 1 20 - -
Bva12g02125 1110 Pfam RNB domain 503 855 IPR001900 GO:0003723|GO:0004540
Bva12g02125 1110 PANTHER RIBONUCLEASE 27 1108 - -
Bva12g02125 1110 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1085 IPR028591 GO:0000175|GO:0034427
Bva12g02125 1110 ProSitePatterns Ribonuclease II family signature. 824 848 IPR022966 -
Bva12g02125 1110 SUPERFAMILY Nucleic acid-binding proteins 465 947 IPR012340 -
Bva12g02125 1110 MobiDBLite consensus disorder prediction 1 46 - -
Bva12g02125 1110 SUPERFAMILY Nucleic acid-binding proteins 142 355 IPR012340 -
Bva12g02125 1110 PANTHER DIS3-LIKE EXONUCLEASE 2 27 1108 - -
Bva12g02125 1110 Pfam Dis3-like cold-shock domain 2 (CSD2) 394 472 IPR041505 -
Bva12g02125 1110 SUPERFAMILY Nucleic acid-binding proteins 346 477 IPR012340 -
Bva12g02125 1110 SMART RNB_2 503 857 IPR001900 GO:0003723|GO:0004540
Bva12g02125 1110 Gene3D - 378 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02125 Bva-Chr12 16498628 16504782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02125 K18758 - gmx:100817387 1501.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02125 12 16498628 16504782 Bva12g02125 12 16498628 16504782 ECH