Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02072 ATGCCCGCTTCCCCCTCCTTCCCTTCAGCAGAAAACCGAACCAAATGGAGGAAGCGCAAGAGAGAGTCCCAAATCGGACGGCGGCAGCTGAAGCACGAGGACGAAGACGACGACGAAGAAGAACCCAATGGTGAAGACGACCACCTTGAACGCGAGGACGATTCCGAGGACCAAACCCACCACCCTAATTCTCAATCTGGGCCTAATTCTGTGGCACATCAGGAGATCGAGGTCTTGTCGGACGAAGGAATCCAAATATCCCAGTTCCCTGTAGTGATCAAGCGCACTGTTAATCGCCCCCACTCATCCGTTATGGCAATTGTGGCTTTGGAGCGAGCCAACGAGTCTGGAGACAACAAGGGACAGTTGCAGAATCCTCCATTTTTGGAGAATGTGTCGTATGGGCAGCTGCAGGCCTTGTCCTCCGTGCCCGAAGATAGTTCATCTTTGGATCAGGACCGGAACGATGGCAGTAATTCGGCTTATGTGATCACTTCGCCTCCAATATTGGAAGGTCGTGGCGTTGTTAAGCGATTTGGGAATAGGGTTCTTGTAGTCCCAATGCATTCAGATTGGTTTTCGCCAGCCACTGTGCATCGACTTGAGAGACAGGTGGTGCCGCATTTCTTCTCTGGGAAGTCACAAGATCATACACCGGAGAAGTACATGGATTTAAGGAACTATATTGTAGCGCGGTACATGGAAGATCCAGGGAGGAAGCTTACAGTCTCTGATTGCCAGGGATTATTAGCTGGGGTAGATAATGAAGATTTAGCTCGAATTGTCAGGTTCCTTGATCACTGGGGAATTATCAATTACTGTGCTCAGGTTCCTAGTCACGAGGCTTTGAATGATGACTCATACTTGAAGGAAGAGACATGTGGAGAGATCCGCCTGCCATCAGATGCCTTGAAATCCATTGatagtttgataaaatttgacaGGCCCAAGTGTAAGCTTAAAGCAGGCGAAATTTATTCATCATTGAGAACTCAAAATGTTGATATCTCTGATTTGGACGACAGAATCAGAGAGCATCTATCTGAAAATTTTTGCACTTGTTGCTCTCGACCTCTTCCTGTTGTATACTATCAGTCACAAAAAGAGGCCGATATTCTACTTTGCACTGATTGCTTCCATGATGGAAAGTTCGTTATTGGTcattcaagcatagattttaTGAGGATGGATTCGACACGGGATTATGGTGATCTAGATGGTGATAGTTGGACTGATCAAGAAACTTTGCTGCTGCTTGAAGCAATGGAGGTTTACAATGAGAATTGGAATGAAATTGCTGAGTATGTCAGCACCAAGTCAAAGGCACAGTgcattcttcattttctccgtCTACCCATGGAAGATggaaaattggaaaatatCAATGTTCCAAGTTTGCCATTGTCATCCAATAAATTGAATAGAGATGATTGCGGAGGATcacattcaaattcaaatgggGATTCTGCAGGACCCTTCCATCAAAGCAGTGACTCTGACAGCAGGCTTCCTTTTGCAAATTCTGGAAACCCTGTTATGGCACTGGTTACATTCTTGGCCTCTGCCGTTGGACCGAGAGTAGCTGCTGCTTGTGCTCATGCATCATTAGCGGTATTATCAGAGGATAATTCTGGTAGCATGTCACAGGCGGAAGCACCTGGGCATGGTAACAGGATGAACTTGGAAAGCGTGCATGGTAGAGATGGTGGTCTTCATGGAGAAGTTGCAATCTCAAATCAGCAAAATGAGGACAAGGCAAAAATACCTGGCTCCTGGGGTCAAAATGCCGGAGAGGCCACCCCACTATCTGCAGAGAAAGTTAAAGATGCTGCTAAGGCAGGCTTATCCGCTGCAGCCATGAAGTCTAAATTGTTTGCTGATCATGAAGAGAGGGAAATTCAGAGACTCTGTgctaatataattaatcatcagTTGAAAAGATTGGAGTTGAAGCTGAAGCAGTTCGCAgaaattgaaactttattGATGAAAGAATGCGAACAGGTGGAGAGGGCAAGGCAGAGGTTTGCTGCTGAACGGTCCCGCGTTATATCAACCCGGCTTGGAACTGGTGGTGCCACGCCTCCAATGAATGTATCTGGTGTTGGTCCTTCCATGGTCAACAATAATGGCAATAGTAGGCCACAAATGATGTCTGGTTCTCCATCACAGCCTAGCATTTCAGGATACGGCAACAGCCAACCAGTTCAAGTTCATCCACACATGTCTTTTGTCCCTCGGCCTACAATGTTTGGGTTAGGGCAAAGGTTGCCCCTATCCATGATACAACAGTCCCAGACAACTTCAAATGCCATGTTCAGTGCCCCTGGTAATGTGCAGCCTACTAGCAATCATCCATTGTTGAGGCCTGTATCAGGGACTAACTCTGGTTTAGGTTA 2399 0.4469 MPASPSFPSENRTKWRKRKRESQIGRRQLKHEDEDDDEEEPNGEDDHLEREDDSEDQTHHPNSQSGPNSVAHQEIEVLSDEGIQISQFPVVIKRTVNRPHSSVMAIVALERANESGDNKGQLQNPPFLENVSYGQLQALSSVPEDSSSLDQDRNDGSNSAYVITSPPILEGRGVVKRFGNRVLVVPMHSDWFSPATVHRLERQVVPHFFSGKSQDHTPEKYMDLRNYIVARYMEDPGRKLTVSDCQGLLAGVDNEDLARIVRFLDHWGIINYCAQVPSHEALNDDSYLKEETCGEIRLPSDALKSIDSLIKFDRPKCKLKAGEIYSSLRTQNVDISDLDDRIREHLSENFCTCCSRPLPVVYYQSQKEADILLCTDCFHDGKFVIGHSSIDFMRMDSTRDYGDLDGDSWTDQETLLLLEAMEVYNENWNEIAEYVSTKSKAQCILHFLRLPMEDGKLENINVPSLPLSSNKLNRDDCGGSHSNSNGDSAGPFHQSSDSDSRLPFANSGNPVMALVTFLASAVGPRVAAACAHASLAVLSEDNSGSMSQAEAPGHGNRMNLESVHGRDGGLHGEVAISNQQNEDKAKIPGSWGQNAGEATPLSAEKVKDAAKAGLSAAAMKSKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERARQRFAAERSRVISTRLGTGGATPPMNVSGVGPSMVNNNGNSRPQMMSGSPSQPSISGYGNSQPVQVHPHMSFVPRPTMFGLGQRLPLSMIQQSQTTSNAMFSAPGNVQPTSNHPLLRPVSGTNSGLG 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02072 798 ProSiteProfiles SWIRM domain profile. 183 281 IPR007526 GO:0005515
Bva12g02072 798 MobiDBLite consensus disorder prediction 141 160 - -
Bva12g02072 798 Pfam SWIRM domain 186 272 IPR007526 GO:0005515
Bva12g02072 798 Pfam SWIRM-associated region 1 612 687 IPR032451 -
Bva12g02072 798 Gene3D - 405 455 - -
Bva12g02072 798 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 65 797 - -
Bva12g02072 798 MobiDBLite consensus disorder prediction 34 51 - -
Bva12g02072 798 MobiDBLite consensus disorder prediction 1 69 - -
Bva12g02072 798 CDD SANT 408 450 IPR001005 -
Bva12g02072 798 SUPERFAMILY Homeodomain-like 182 274 IPR009057 -
Bva12g02072 798 ProSiteProfiles Zinc finger ZZ-type profile. 345 400 IPR000433 GO:0008270
Bva12g02072 798 PANTHER SWI/SNF COMPLEX-RELATED 65 797 - -
Bva12g02072 798 MobiDBLite consensus disorder prediction 770 798 - -
Bva12g02072 798 ProSiteProfiles Myb-like domain profile. 401 451 IPR001005 -
Bva12g02072 798 SMART sant 405 453 IPR001005 -
Bva12g02072 798 MobiDBLite consensus disorder prediction 471 504 - -
Bva12g02072 798 MobiDBLite consensus disorder prediction 711 730 - -
Bva12g02072 798 ProSiteProfiles SANT domain profile. 404 455 IPR017884 -
Bva12g02072 798 Pfam Myb-like DNA-binding domain 408 450 IPR001005 -
Bva12g02072 798 SUPERFAMILY Homeodomain-like 406 459 IPR009057 -
Bva12g02072 798 Gene3D - 189 276 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02072 Bva-Chr12 16201353 16207611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02072 351 447 EF-hand Containing Proteins AT3G07740 30.189 7.83e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02072 K11649 - gmx:100780440 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02072 12 16201353 16207611 Bva12g02072 12 16201353 16207611 ECH