Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02052 ATGTGTCCCCTGGCCCCTACTGAATTGCAGCGTATTTTTGAGAAGCTTGATATTAACGGCGATGGCTCCGTGAGCCTTGAGGAGCTAAATTGGCTGCTTGAAAAGCTAGGCTTTCAATTTAGCCTTCATGAGCTTGAATCCATAGTTGGAAACAAGAGTCTTGACATGGATGAATTCATGTTCTTCTACAACTCCATATTGAAGGAGAACAATGGCGGCGAAGAGGAGGACGTGGAGAGTGACCTTGTTAAAGCCTTCAAAATATTTGACTTGAATAATGATGGATTCATCACAAGCCAAGAGCTAGAGTGTGTTCTGAGGAGACTTGGCTATTTGGACGACAACAATGTTAAGGACTGCAGAAGCATGATCTGTGTCTACGACACCAACTTAGACGGACGGCTTGATTTCGAGGAATTCAAGAACATGATGTTGCCTACCATTTCTTA 449 0.4343 MCPLAPTELQRIFEKLDINGDGSVSLEELNWLLEKLGFQFSLHELESIVGNKSLDMDEFMFFYNSILKENNGGEEEDVESDLVKAFKIFDLNNDGFITSQELECVLRRLGYLDDNNVKDCRSMICVYDTNLDGRLDFEEFKNMMLPTIS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02052 149 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 145 - -
Bva12g02052 149 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Bva12g02052 149 CDD EFh 81 144 IPR002048 GO:0005509
Bva12g02052 149 Pfam EF hand 8 35 IPR002048 GO:0005509
Bva12g02052 149 SUPERFAMILY EF-hand 7 145 IPR011992 -
Bva12g02052 149 Gene3D - 6 64 - -
Bva12g02052 149 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 3 145 - -
Bva12g02052 149 ProSitePatterns EF-hand calcium-binding domain. 90 102 IPR018247 -
Bva12g02052 149 ProSiteProfiles EF-hand calcium-binding domain profile. 115 149 IPR002048 GO:0005509
Bva12g02052 149 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Bva12g02052 149 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Bva12g02052 149 Gene3D - 65 144 - -
Bva12g02052 149 SMART efh_1 119 147 IPR002048 GO:0005509
Bva12g02052 149 SMART efh_1 8 36 IPR002048 GO:0005509
Bva12g02052 149 SMART efh_1 81 109 IPR002048 GO:0005509
Bva12g02052 149 Pfam EF-hand domain pair 80 144 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02052 Bva-Chr12 16076907 16078187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02052 2 147 EF-hand Containing Proteins AT1G21550 46.405 2.44e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02052 K13448 - gmx:100500561 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02052 12 16076907 16078187 Bva12g02052 12 16076907 16078187 ECH