Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01982 ATGGGAGTTGTCACTGTATCTAGTTCAGCTGCACGGACTCCACCAGGATTGAACACAAAGTTTTCGAGTTATCGGTCTACACCAACGAGACTCTTTGTTGTAGCATTTAGAGGTGATAAATCCAATAATATGGCTTTGGTTGCGCCTCAAGAGCAAATTGCTCTACCCATTGAAAAAGCGAAGCAGCGCccaaaaagaatacaaaaaagtaataaagtaTCAAAGAAAGACAGAGCTGTCTCTACAGAAGAAGCTTCTTCATCAACTTTGGATGTGGATTACAATGAAGCTGCTGCCaaacttgaaaatatatacaaactcAGCCCTGCATATAATACTCGTAAAGCAGAAGATATGAATAGTTTAATCAAAAGAATCTCAcgaaggaggaagaagattggtgatgatgatgataaagaGGGGGCGGTAAACAATGATGGTGGTGTAGTTAAGAACCGGAATAAGAAGCCCAAGCGATTGAATCTTGATGAGAGGATTGCTttaaaaaaggacaaaaatgagGAGGTGGTTGTTCCAACacgaaagaaaagaaaggttaAGACTAGGACTGAGAAGATTGATGAGCTTGTCAGGGAATATTCAGCATCAACCAATTTAAACAGCCTGGattggaaaaaaatgaagataccACCAGTTCTTCCTTCTTCAGAGCATACTTGGTTGTTCAAATTGATGCAGCCAGTGAAGGCAGTCCTTCGAGTGAAAGAAGATCTACAGAAGGAGCTGGGGAGAGAACCTACAGAGGGTGAGCTAGCTGATGCAACAGCCATGAGCATTTTTCAAGTAAGGAGAGCAGTAGAAGTTGGTCAAGCTGCAAGAAACAAGCTGATTAAGCACAATCTTCGGCTCGTCCTGTTTGTGatcaacaaatattttcaagatttttcaaATGGCCCAAAGTTCCAAGACCTCTGTCAGGCAGGAGTTAAGGGACTTATCACAGCAATTGATCGGTTTGAGCCAAACAGGAAGTTCCGGCTTTCTACATATGGTCTGTTCTGGATAAGACATGCCATTATTCGTTCTATGACCCTGTCTAGCTTCACTCGCGTACCCTTTGGTCTTGAATCGGTTAGAGTAGATATTCAAAGAGCTAAGCTCGAGTTAACATTTGAGCTTCAGAGGTCACCGACAGACGATGAGATAATAGAAAGAGTTGGGATCTCTCCTGGAAGATACCATGAAGTAAGGAAGGCCGCAAAGCCTGTTCTTTCCCTTAATTCAAAGCATGCGACCACACAAGAGGAGTTTATCAATGGGATCACCGATGATGATGGCGTTAATGGCGATAACAGGAGGCAACCTGCACTTCTAAGGCTCGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATATGGGCTTGATGGTAAGGGTGACAGAACATTGGGAGAAATCGCTGGGAACTTGAATATTTCGAGGGAAATGGTAAGGAAGCATGAAGTCAAGGCTCTCTTGAAGCTCAAGCATCCAACTCGGATGGATTATCTTCGTCGTTATGTTGTATG 1553 0.3954 MGVVTVSSSAARTPPGLNTKFSSYRSTPTRLFVVAFRGDKSNNMALVAPQEQIALPIEKAKQRPKRIQKSNKVSKKDRAVSTEEASSSTLDVDYNEAAAKLENIYKLSPAYNTRKAEDMNSLIKRISRRRKKIGDDDDKEGAVNNDGGVVKNRNKKPKRLNLDERIALKKDKNEEVVVPTRKKRKVKTRTEKIDELVREYSASTNLNSLDWKKMKIPPVLPSSEHTWLFKLMQPVKAVLRVKEDLQKELGREPTEGELADATAMSIFQVRRAVEVGQAARNKLIKHNLRLVLFVINKYFQDFSNGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTLSSFTRVPFGLESVRVDIQRAKLELTFELQRSPTDDEIIERVGISPGRYHEVRKAAKPVLSLNSKHATTQEEFINGITDDDGVNGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALLKLKHPTRMDYLRRYVV 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01982 517 Gene3D - 274 351 - -
Bva12g01982 517 Gene3D - 440 517 IPR036388 -
Bva12g01982 517 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 422 513 IPR013324 -
Bva12g01982 517 Pfam Sigma-70 region 2 283 349 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 PRINTS Major sigma-70 factor signature 456 468 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 PRINTS Major sigma-70 factor signature 334 342 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 PRINTS Major sigma-70 factor signature 492 503 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 PRINTS Major sigma-70 factor signature 310 323 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 PRINTS Major sigma-70 factor signature 477 492 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 Gene3D - 230 273 IPR036388 -
Bva12g01982 517 Gene3D - 356 408 IPR036388 -
Bva12g01982 517 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 73 350 IPR013325 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 MobiDBLite consensus disorder prediction 59 88 - -
Bva12g01982 517 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 279 505 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 517 - -
Bva12g01982 517 Pfam Sigma-70, region 4 452 505 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 MobiDBLite consensus disorder prediction 130 144 - -
Bva12g01982 517 MobiDBLite consensus disorder prediction 1 22 - -
Bva12g01982 517 Pfam Sigma-70 region 3 237 277 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 Pfam Sigma-70 region 3 367 435 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bva12g01982 517 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 517 - -
Bva12g01982 517 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 358 425 IPR013324 -
Bva12g01982 517 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01982 Bva-Chr12 15705604 15709530 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01982 K03093 - pvy:116115100 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01982 12 15705604 15709530 Bva12g01982 12 15705604 15709530 ECH