Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01969 ATGGAGGGCGGCGCAGGAAGAGGTTTGGAATGCCAGAAGATTATGGATGGGAAGGCGAGTAACAGGAATGGtttagagaagaaaattcCCTCCTGTTGCTTGAAGGCTAAAGCTTCTGCCCCCGAGTTAGAAGCAAAGTGTCATTCTACTGTTGTTTCTGGGTGGTTCTCAGATTCTCAATCTTGCTCTGGGAAATGTAGaaaaatggtttattttaaCAACCCAATGTGGCCAGGAGAAGTCCATTCAATCaaagtagaaaaaattttgtacaagGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAACCTATGGGAAAGTACTTGTCCTTGATGGGATTGTTCAGTTGACAGAGAAAGATGAATGTGCTTACCAGGAGATGATTACTCATCTTCCCCTTTGCTCGATTCCATCACCAAAAAGGGTTCTGGTTGTTGGTGGTGGAGATGGGGGGGTTCTGAGGGAAATAAGTCGCCACAGTTCTGTGGACTATATTGATATTTGTGAAATTGACAAGATGGTTATTGATGTTTCTAGGAAGTTCTTCCCAGAATTAGCTGTTGGGTTTGAAGATCCTCGTGTACACCTTCATGTTGGTGATGCTATTGAATTTCTTCGTCAAGCACCTGAAGGGAAATATGATGTCATTATTGTTGATTCATCAGATCCCGTGGGTCCTGCCCAGGAACTCGTGGAGAAGCCATTTTTTGAGACAATTGCCAGGGCATTAAGGCCAGGTGGAGTTCTTTGTAACATGGCAGAAAGTATGTGGCTTCATACGCACCTCATTGAAGATATGATCTCTATTTGCCGTGAAACATTCAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCTACATATCCGAGTGGTGTGATAGGCTTTATTCTATGTGCAACGGAGGGGCCACCTGTTGATTTTGTAAACCCCATCAATCCCATTGAGAAGGTGGAAGGTGCTGTTAACCACAAAAGAGAACTCAGATTCTACAACTCAGAGGTGCACTCTGCTGCTTTTGCGTTGCCAGCATTTTTGAAGAGGGAAGTGAGCTTGCTCCGTGACACCGGCGCCCCAGCTGTTGTAGCCCTTAATGCAGCCAAGGCAACATTCAATAATCCTTCTCGTGGTTTCCAGGATTA 1151 0.4318 MEGGAGRGLECQKIMDGKASNRNGLEKKIPSCCLKAKASAPELEAKCHSTVVSGWFSDSQSCSGKCRKMVYFNNPMWPGEVHSIKVEKILYKEKSEYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMITHLPLCSIPSPKRVLVVGGGDGGVLREISRHSSVDYIDICEIDKMVIDVSRKFFPELAVGFEDPRVHLHVGDAIEFLRQAPEGKYDVIIVDSSDPVGPAQELVEKPFFETIARALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGVIGFILCATEGPPVDFVNPINPIEKVEGAVNHKRELRFYNSEVHSAAFALPAFLKREVSLLRDTGAPAVVALNAAKATFNNPSRGFQD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01969 383 Pfam Spermine/spermidine synthase domain 125 309 - -
Bva12g01969 383 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Bva12g01969 383 CDD AdoMet_MTases 169 253 - -
Bva12g01969 383 Hamap Polyamine aminopropyltransferase [speE]. 54 354 IPR001045 GO:0003824
Bva12g01969 383 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Bva12g01969 383 TIGRFAM speE: spermidine synthase 82 348 IPR001045 GO:0003824
Bva12g01969 383 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 360 IPR001045 GO:0003824
Bva12g01969 383 PIRSF Spermidine_synth 42 357 IPR030668 GO:0006595
Bva12g01969 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 69 352 IPR029063 -
Bva12g01969 383 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Bva12g01969 383 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Bva12g01969 383 PANTHER SPERMINE SYNTHASE 1 360 - -
Bva12g01969 383 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 304 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01969 Bva-Chr12 15606563 15612461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01969 K00797 - gmx:100815244 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01969 12 15606563 15612461 Bva12g01969 12 15606563 15612461 ECH