Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01952 ATGGGCTGCTATTTTGCAAAGGAAGCTAAGTTACCCGGTTACGAGAAACCCTCTGTTCTTGCTGCTGAGACGCCTTTTACTGTGAATGAGGTAGAAGCCTTACAAGTTCTTTTTAAGAAGTTAAGCAGTTCAATTATTGATGATGGTCTTATTCACAAGGAAGAATTCCAGCTGGCACTCTTCAGGAATAGAAATAAGAGGAATCTGTTTGCAGACAGAatttttgatttatttgatgtCAAGCGCAATGGGGTTATTGAGTTTGGGGAATTTGTTCGATCTTTGGGAGTTTTTCACCCAAATGCACCTGTAGAAGACAAAATTACGTTTGCTTTTAGGTTGTATGATTTGAGGCAGACAGGTTTTATTGAACGAGAGGAGTTGAAAGAGATGGTATTGGCACTTCTACACGAGTCAGATCTTGTGCTCTCGGAAGATGTTATTGAAACCATAGTGGATAAGACATTTGGTGAAGCTGACACAAAAGGAGACGGAAAGATCGATCAAGATGAGTGGAAAGCATTTGTGTCAAAGCATCCATCTCTAATTAAGAACATGACCCTACCATATCTGAAGGATGTAACCCTAGCATTTCCCAGTTTTACCCTACAAACTGAAGTTGAAGAGTTGGAGGAGTG 638 0.3966 MGCYFAKEAKLPGYEKPSVLAAETPFTVNEVEALQVLFKKLSSSIIDDGLIHKEEFQLALFRNRNKRNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPNAPVEDKITFAFRLYDLRQTGFIEREELKEMVLALLHESDLVLSEDVIETIVDKTFGEADTKGDGKIDQDEWKAFVSKHPSLIKNMTLPYLKDVTLAFPSFTLQTEVEELEE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01952 212 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Bva12g01952 212 SUPERFAMILY EF-hand 19 198 IPR011992 -
Bva12g01952 212 CDD EFh 107 177 IPR002048 GO:0005509
Bva12g01952 212 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 209 - -
Bva12g01952 212 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Bva12g01952 212 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Bva12g01952 212 Gene3D - 17 210 - -
Bva12g01952 212 PRINTS Recoverin family signature 74 95 - -
Bva12g01952 212 PRINTS Recoverin family signature 167 187 - -
Bva12g01952 212 PRINTS Recoverin family signature 121 139 - -
Bva12g01952 212 PANTHER CALCINEURIN B 1 209 IPR045198 GO:0005509|GO:0019722|GO:0019900
Bva12g01952 212 SMART efh_1 107 135 IPR002048 GO:0005509
Bva12g01952 212 SMART efh_1 151 179 IPR002048 GO:0005509
Bva12g01952 212 SMART efh_1 70 98 IPR002048 GO:0005509
Bva12g01952 212 Pfam EF-hand domain pair 106 175 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01952 Bva-Chr12 15491332 15495059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01952 24 211 EF-hand Containing Proteins AT5G24270 80.319 5.10e-107 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01952 K06268 - zju:107414799 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01952 12 15491332 15495059 Bva12g01952 12 15491332 15495059 ECH