Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01936 ATGGAAGCCTCCTTCCTTTGCCCCTATCCCTCTTTCAGTGGCTACAGGACGAGCAAAGATGCTCCACAGATACAGTCAGTCTATGTTCAGAAAGTCATCACTTGTTTCCCTATTCGTAACCAAGACCAGAAACGCAGTCAGAAGCTTTACATTGTGCCCAATAGGACTATTGCCCGTTTCTGTGTGTCAACATCTTCAGTTGGATCACTTGATGTGGGTGAGACAAGCCATGGAAATTATGTTTCTACTGGTTTTTCATCTTCAAGACACAATCAGAGCATGAGCGATCTTGAGAGACAGTTGCAAGAGGTATTTGATGAAATCAAAACAATGATTAGGAtgggaaacaagaaagacgCTATAGACTTACTTAAGGCAAACTATGAAGTGGTGCAAGAGCGGCTGGGTGCAGGTGCTAAAGGCATAGAAGAAGCTGCAATTCTGGATGTCATAGCGTTGGGTTATATGGCTGTTGGAGACTTGAAACGTGTTGGTTCACTATTGAATTTGATGAGTGAAGTAGTTAACAATCTGGAGGATGGTGTACCACATCTAGATTCAATACTCATGCATATGGGAAGTATGTATTCAACTATgggaaattttgagaaatcatTAGATGTATATCAAAGGACTATTGGCATCATCGAAAACAGCTATGGTAAGGATAATGCTTTTCTTGTCACACCCTGCTTGGGCATGGCAAAAGCTCTTGGTACTATTGGAAAAGCAACAAAAGCAATAGAAGTATACCAGCGGGCAATCACTATCTTGGAATCAAGTAGAGGTGCTGAAAGCAAGGATTTGGTTGTACCTTTACTTAGTCTTGGCAATCTTCTactgaaagaaggaaaagccaTTGATGCTGAAACTCTTTTTACAAGAGTTCTGaacatatataagaaattttatggaCAAAATGATGGAAGAGTTGGAATGGCTATGAATTCCCTGGCCCATGCTAAGTGTGCACAAGGGAACATAGAAGAAGCAATTCGTTTGTACAAAAGTTCTCTTCAGATCATCAAGGATTCCAATTACATGTCAGTGGATGACAATATTACGGAGAAAATGAGAGTGGATTTGGCTGAATTGCTCCATGCTGTGGGAAGAGGACAAGAAGGTAGAGAGCTATTAGAGGAGTGCTTATTGATAACTGAGAGGTATAAAGGAGAAGGACACCCTAGCTTAGTAACGCACATGATCAATCTCGCTACTTCTTATTCTCGCTCAAAGAATTATGTGGAGGCTGAACACTTGCTGAGAAGAAGTTTGGAAATCATGATAAAGAATACGGGAAGTGAGGACCAGTCTATCTCCTTCCCCATGTTGCAACTTGCAGTAACACTCTTCCAGTTGAAACAGGATGAAGAAGCAGAGCAGCTTGCTCTGGAGGCTTTGCGCATCCGTGAGAAGGCATTTGGAGAAAATTCTCTTCCTGTTGGGGAGGCTTTGGACTGTTTGGTTTCTATTCAAACCAGACTAGGTGGAGATGATAGCGAGTTACTCAAACTACTTAAGAGGATCTTAACTATCCAAGAGAAAGAATTTGGGTATGACAGTGAGGAGGTTATGGTTACCctgaaaaaaattgtattctaCTTGGATAAATTAGGGAGAAAGGATGAAAAGTTTCCTTTGCAGAGAAGGTTGTCTGTGCTTCGAAGGAAATACAAGCAAAGGATTCATCACTA 1694 0.3932 MEASFLCPYPSFSGYRTSKDAPQIQSVYVQKVITCFPIRNQDQKRSQKLYIVPNRTIARFCVSTSSVGSLDVGETSHGNYVSTGFSSSRHNQSMSDLERQLQEVFDEIKTMIRMGNKKDAIDLLKANYEVVQERLGAGAKGIEEAAILDVIALGYMAVGDLKRVGSLLNLMSEVVNNLEDGVPHLDSILMHMGSMYSTMGNFEKSLDVYQRTIGIIENSYGKDNAFLVTPCLGMAKALGTIGKATKAIEVYQRAITILESSRGAESKDLVVPLLSLGNLLLKEGKAIDAETLFTRVLNIYKKFYGQNDGRVGMAMNSLAHAKCAQGNIEEAIRLYKSSLQIIKDSNYMSVDDNITEKMRVDLAELLHAVGRGQEGRELLEECLLITERYKGEGHPSLVTHMINLATSYSRSKNYVEAEHLLRRSLEIMIKNTGSEDQSISFPMLQLAVTLFQLKQDEEAEQLALEALRIREKAFGENSLPVGEALDCLVSIQTRLGGDDSELLKLLKRILTIQEKEFGYDSEEVMVTLKKIVFYLDKLGRKDEKFPLQRRLSVLRRKYKQRIHH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01936 564 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Bva12g01936 564 SUPERFAMILY TPR-like 360 471 IPR011990 GO:0005515
Bva12g01936 564 Pfam Tetratricopeptide repeat 444 478 - -
Bva12g01936 564 Pfam Tetratricopeptide repeat 274 343 - -
Bva12g01936 564 Pfam Tetratricopeptide repeat 357 428 - -
Bva12g01936 564 Pfam Tetratricopeptide repeat 188 260 - -
Bva12g01936 564 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 35 548 - -
Bva12g01936 564 SMART tpr_5 440 473 IPR019734 GO:0005515
Bva12g01936 564 SMART tpr_5 398 431 IPR019734 GO:0005515
Bva12g01936 564 SMART tpr_5 312 345 IPR019734 GO:0005515
Bva12g01936 564 SMART tpr_5 270 303 IPR019734 GO:0005515
Bva12g01936 564 SMART tpr_5 228 261 IPR019734 GO:0005515
Bva12g01936 564 SMART tpr_5 186 219 IPR019734 GO:0005515
Bva12g01936 564 Gene3D Tetratricopeptide repeat domain 358 562 IPR011990 GO:0005515
Bva12g01936 564 Coils Coil 94 114 - -
Bva12g01936 564 SUPERFAMILY TPR-like 188 434 IPR011990 GO:0005515
Bva12g01936 564 Gene3D Tetratricopeptide repeat domain 161 357 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01936 - - aprc:113852595 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01936 12 15404997 15409229 Bva12g01936 12 15404997 15409229 ECH