Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01935 ATGGAGAGGTCAAGATCTAAGAGGAACTACTACTATGATCAAGACTATGATTCAGAGACCTTGGCTAGGAACAGACCTCGCTATAACCACCACTATACCAGTAATAACCACCGTCACCGTggtggcggcggcggcggcggtgGTGGACGACCTTCTAAAGCTCAAGATTCATCTCTAATGGTGACCACAAGTTACCGCATTTTGTGCCATGATATGAAAGCCGGTGGTGTGATTGGCAAATCGGGTAGCATTATAAAGTCCATTAGGCAACACACCGGGGCGTGGATCAACGTGCATGAGCTGATCCCCGGCGACGAGGAACGAATCATTGAGATTTCGGACACGCGCCGGCGTGATCCAGAAGGCCGAATGCCGTCGTTCTCGCCAGCGCAGGAGGCACTGTTGTTGATTCATGAGAGGATTCTTGAGAGCGACGTTGCATTTGGGATTGGCGAGGAGGACGAGGAGTATGGGGGCAGAGGTGGAAGCAATCGTGTGGCTACTAGACTGGTGGTGTCCAGAATGCATGTTGGGTGTTTGTTGGGAAAAGGAGGGAAGATAATTGAACAAATGAGGATGGATACCAAGACACAAATTAGGATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCAGAGGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATTGTAATTATATCATCACGCCTGAGGGAGAGCCAGCATCGTGACCGCAGCCATTTCCATGGACGAGTACATTCACCTGAGCGTTTTTTCCCACCCGATGATGATTATAACCCTCATGTGACTGGTGCTGCTCGTAGATCATCTATGGATGCGGCAAATTTTGGATCACGACTACCAGCTTCGAATGCTAGAAGCAATAACTATCACTCACTAAGTTATGCCATGGAACCAGGGGGTGCCCCTTTGGCTGATGATACACAACCCTTTTATGGTGAGGACATTGTTTTCCGAATACTTTGTCCAGTTGACAAAATTGATCGTATCATCGGGGAGTCAGATGGAATAGTGGAATTCCTTCAGAATGAAGTTGGGGTCGATATTAAGGTCACTGATCCTGTGGTTGGTTCAGATGAACAAATAATTACTATTTCTTCTGATGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTGCACATTCAAACTCGTATTGTAGATCTTGTTCTAGATAAGGACAACATTATAACCACCAGGCTTGTTGTTCCAGCTGGTGATATTCAATGTTTAGATGGAAAAGATGCATCACTATCAGAAATGAGGAGATTAACCGGCGCAAATATACAAATTCTGCCTGGAGAAGAAGTTCCTCTTTGTGTTGCAAAAACTGACGAGCTGGTTCAGATTGTAGGTGAAATAAAAGCTGCCCGAGATGCTGTTGTTGAGGTGACATCGAGACTACGAAGTTATTTATATAGGGATTTCTTGCAAAAGGACACAACACCACCAGCTCCCCCTGTACCTGGCTTGGAATCATCTTCATCCAATAATACAGCTCCAGTTCATGAGGTTTATACTGAAACTCCTAAAACCTATCAGAATGTGCAAACTGTAACGGCACCTCTTCCATCAAAGGAGACCGGAGGATCTGGCAGTGAAACAGTAAAGCAGAAAGAATGTGGCCGGCACGATGATGTGCTAAGTGGTTTAAATAGGATCCCTGTACCACTTGTCACTAGGAGTACACTTGAAGTTGTGATACCGGAATATGCAGTTCCAAAGCTTATagcaaaatcaaaaaacaaGCTTGCTCAAATAAGTGAGTTATCAGGAGCCAACGTAACCCTGGTAGAAGATAGACCAGATGTGACGCAGAAGATCATACAAATATCTGGTACACCAGAACAGGCAGAGAGAGCCCAGAGCTTACTCCAGGGATTTATTTTGAGCACACAAGAAGATGGCCCCTA 1949 0.4433 MERSRSKRNYYYDQDYDSETLARNRPRYNHHYTSNNHRHRGGGGGGGGGRPSKAQDSSLMVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDVAFGIGEEDEEYGGRGGSNRVATRLVVSRMHVGCLLGKGGKIIEQMRMDTKTQIRILPRDHNLPRCVSMSEEIVQVVGDANAVKNAIVIISSRLRESQHRDRSHFHGRVHSPERFFPPDDDYNPHVTGAARRSSMDAANFGSRLPASNARSNNYHSLSYAMEPGGAPLADDTQPFYGEDIVFRILCPVDKIDRIIGESDGIVEFLQNEVGVDIKVTDPVVGSDEQIITISSDEGPDDELFPAQEALLHIQTRIVDLVLDKDNIITTRLVVPAGDIQCLDGKDASLSEMRRLTGANIQILPGEEVPLCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFLQKDTTPPAPPVPGLESSSSNNTAPVHEVYTETPKTYQNVQTVTAPLPSKETGGSGSETVKQKECGRHDDVLSGLNRIPVPLVTRSTLEVVIPEYAVPKLIAKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01935 649 Pfam KH domain 327 377 IPR004088 GO:0003723
Bva12g01935 649 Pfam KH domain 168 236 IPR004088 GO:0003723
Bva12g01935 649 Pfam KH domain 65 113 IPR004088 GO:0003723
Bva12g01935 649 Pfam KH domain 575 638 IPR004088 GO:0003723
Bva12g01935 649 ProSiteProfiles Type-1 KH domain profile. 324 391 - -
Bva12g01935 649 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 565 643 IPR036612 GO:0003723
Bva12g01935 649 CDD KH-I 575 638 - -
Bva12g01935 649 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 544 - -
Bva12g01935 649 CDD PCBP_like_KH 169 236 - -
Bva12g01935 649 CDD PCBP_like_KH 64 138 - -
Bva12g01935 649 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 317 377 IPR036612 GO:0003723
Bva12g01935 649 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 62 113 IPR036612 GO:0003723
Bva12g01935 649 SMART kh_6 61 142 IPR004087 GO:0003676
Bva12g01935 649 SMART kh_6 323 396 IPR004087 GO:0003676
Bva12g01935 649 SMART kh_6 164 240 IPR004087 GO:0003676
Bva12g01935 649 SMART kh_6 407 481 IPR004087 GO:0003676
Bva12g01935 649 SMART kh_6 572 642 IPR004087 GO:0003676
Bva12g01935 649 ProSiteProfiles Type-1 KH domain profile. 165 235 - -
Bva12g01935 649 MobiDBLite consensus disorder prediction 22 57 - -
Bva12g01935 649 ProSiteProfiles Type-1 KH domain profile. 62 134 - -
Bva12g01935 649 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 246 IPR036612 GO:0003723
Bva12g01935 649 Gene3D K Homology domain, type 1 61 144 IPR036612 GO:0003723
Bva12g01935 649 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 544 - -
Bva12g01935 649 Gene3D - 323 484 - -
Bva12g01935 649 Gene3D K Homology domain, type 1 162 244 IPR036612 GO:0003723
Bva12g01935 649 Gene3D K Homology domain, type 1 572 644 IPR036612 GO:0003723
Bva12g01935 649 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 401 488 IPR036612 GO:0003723
Bva12g01935 649 ProSiteProfiles Type-1 KH domain profile. 573 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01935 Bva-Chr12 15399106 15404471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01935 K21444 - gmx:100804167 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01935 12 15399106 15404471 Bva12g01935 12 15399106 15404471 ECH