Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01881 ATGATGACTCCGGTGGCTTCTTTGCCATCCAACTTTCACTCacattttcttccattatcATCATCTTCGTATTCTTCTTCATTTGCTTCTTGCTCTTGTGGTTCTCCTTCTACTGTCTCTCTGGGTTCAGCTAAATCAACTTTCCTTAGCACATCTCAAAGACTCAAATATGCTCCCGCCATCTCTCCCAGGAGTCGCCTTGCCACTTCACTTGTTGTTCGTATGTCATGGGACGGACCCCTTTCTTCGGTCAAATTGATCATACagggaaaaaatttaaagTTGACAGATGAGGTTAAGCAGCATGTCGAAGAGAAGGTTGGGAAGGCAGTTCAGAAGCATAGTCACTTAGTTAGGGAGGTTGATGTGAGGTTTCAGCCCGAGGAGGAGAGCTTGGGAGAGGACCCAGAACCCGCAGATGTAACTTTGTATATCAAGAAGCATGGAGTGTTGCGGGCTGAGGTAGATGCAGAGTCTCTTTATGGGAGCATAGATTTGGTATCATCAATTATTCAGAGGAAGCTGAGGAAGATAAAGGATAAGGAGACAGACCATGGTCGCCACATGAAGGGGTTCAATAGGTTGAGAGTTAGGGAGCCCACTGTGCTACTACCTGAGGATGGGATAGAGTTACCTactgaagaggaagaagaatttgttgATGAGGTTGTCCGCACAAAATACTTTGACATGCCACCTTTGACTGTATCTGAAGCAATAGAGCAGCTTGAAAATGTTGATCACGACttctatatatttagaaacgaagaaactgGGGAGattaatattgtatataaaagaaaagcaggAGGTTATGGACTCATCATACCCAAAAATGATGGTAAAGCGGAGGCATTGGAGCCCGTGGTGCTAGAACCAGTTAGAGAACCCTCCCTTGCGGAATG 905 0.4088 MMTPVASLPSNFHSHFLPLSSSSYSSSFASCSCGSPSTVSLGSAKSTFLSTSQRLKYAPAISPRSRLATSLVVRMSWDGPLSSVKLIIQGKNLKLTDEVKQHVEEKVGKAVQKHSHLVREVDVRFQPEEESLGEDPEPADVTLYIKKHGVLRAEVDAESLYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGFNRLRVREPTVLLPEDGIELPTEEEEEFVDEVVRTKYFDMPPLTVSEAIEQLENVDHDFYIFRNEETGEINIVYKRKAGGYGLIIPKNDGKAEALEPVVLEPVREPSLAE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01881 301 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 221 274 IPR032528 -
Bva12g01881 301 PANTHER 30S RIBOSOMAL PROTEIN 69 281 - -
Bva12g01881 301 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 87 181 IPR003489 GO:0044238
Bva12g01881 301 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 85 188 IPR036567 -
Bva12g01881 301 CDD RaiA 85 181 IPR003489 GO:0044238
Bva12g01881 301 Gene3D - 233 284 IPR038416 -
Bva12g01881 301 PANTHER 30S RIBOSOMAL PROTEIN 69 281 - -
Bva12g01881 301 Hamap Ribosome hibernation promoting factor [hpf]. 84 278 IPR034694 -
Bva12g01881 301 Gene3D - 85 193 IPR036567 -
Bva12g01881 301 TIGRFAM yfiA: ribosomal subunit interface protein 85 186 IPR003489 GO:0044238
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01881 Bva-Chr12 15152340 15154640 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01881 - - cpap:110823153 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01881 12 15152340 15154640 Bva12g01881 12 15152340 15154640 ECH