Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01879 ATGTctcaaataacaataaaatctcCAAAACACTGCGCAACCAAGCAAGGGATACACATTGAGAGGAACTACAGAAAGctcttctttgctttctctgCATTTCTTACCACAATTCTGGCACTTATATTTCTCGTATGGCTCATCCTCCATCCTTCAAAGCCTCAATTTTCCATGACAGAGGTTGATATCTACCAGCTCAATCTCACAGGGCCTCACCTCAACTCCTCCATCCAACTCACTCTGCTCTCCAAGAACCCAAATCAGAAAGTGGGCATTTACTACGATGAGTTCCAAGTTTATGCAACCTACAAGAGCCAACAGATAACCCTTAATACCCCTGTGCCTCCTTTCTACCAAAACCATGAAGAAAGCAATCTCTTAACAGCTGTTTTGGTGGGAAATGGCCTACCTGTGGCTCCTTCTCTCGGTTATGAAGTGGTTCGCGATCAGAAAGCTGGAAGACTCATTTTAAATGTCAAAGTCAATGGAAGGCTTCGGTGGAAAGTGGGAACTTGGGTCTCTGGGCATTACAGGTTCAATGTTAACTGTGTTTCAATCATGGCCTTTGGCCCTAGCTTGATTGCAGGGCCACTCACTTCAAGGCAGGGAAGTCAGTGTTCTGTAACAATTTG 632 0.4225 MSQITIKSPKHCATKQGIHIERNYRKLFFAFSAFLTTILALIFLVWLILHPSKPQFSMTEVDIYQLNLTGPHLNSSIQLTLLSKNPNQKVGIYYDEFQVYATYKSQQITLNTPVPPFYQNHEESNLLTAVLVGNGLPVAPSLGYEVVRDQKAGRLILNVKVNGRLRWKVGTWVSGHYRFNVNCVSIMAFGPSLIAGPLTSRQGSQCSVTI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01879 210 PANTHER OS05G0367900 PROTEIN 15 210 IPR044839 GO:0098542
Bva12g01879 210 Pfam Late embryogenesis abundant protein 80 183 IPR004864 -
Bva12g01879 210 PANTHER BNAA02G10130D PROTEIN 15 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01879 Bva-Chr12 15141305 15141937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01879 25 183 EF-hand Containing Proteins AT5G21130 25.767 6.49e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01879 - - gmx:100783857 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01879 12 15141305 15141937 Bva06g03047 06 18885031 18886055 ECH
Bva12g01879 12 15141305 15141937 Bva12g01879 12 15141305 15141937 ECH