Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01877 ATGGAGAATTCCACCCAAGAATCCCACCTCAGATCCGAGAATTCTGTAACCTATGAGTTCCCTTACCCTGTTTACTCCATGGCAATCTCCTCCGCCCCTTCCATTACCTCTCATCACCAGCGTATTGCAGTTGGTAGCTTTATTGAAGAGTATGCAAACCGTGTTGATATAATCTCCTTCAACCCTGAAACTCTCACCGTTAGAGCGCAACCTTCCCTCTCCTTGGACCACCCATACCCGCCCACCAAACTAATGTTCCACCCCAAGGCCCACTCTTCCCTCCAAAAGTCCTCCTCCGACCTCCTCGCCACCTCCGGTGACTATCTCCGCCTCTGGGAAGTTCGGGAAAATTCCGTCGAGACAATTTCACTTCTCAACAATAGCAAGAGCAGTGAGTTCTGTGCCCCATTGACCTCCTTTGATTGGAACGAAATCGAGGCCAAGAGAATTGGGACTTCAAGTATTGATACTACCTGTACCATTTGGGATATCGAGAAGGGGGTTGTTGAAACTCAGCTAATTGCCCACGATAAAGAGGTTTATGATATTGCTTGGGGTGAAGCTAGAGTTTTTGCATCTGTTTCTGCTGATGGGTCTGTTAGAATATTCGACCTGAGAGACAAGGAGCACTCCACGATTATATACGAGAGTCCACAGCCAGATACCCCTTTGCTTAGATTGGCTTGGAATAAGCAGGATTTGAGATACATGGCAACTATTTTGATGGATAGCAATAAAGTTGTGATTTTGGATATTAGATCACCAACGATGCCTGTGGCGGAGTTGGAGAGGCATCGTGCTAGTGTCAATGCCATTGCTTGGGCTCCGCAGAGTAGTAGGCATATTTGTTCTGCCGGGGATGATTCGCAGGCGCTTATTTGGGAATTGCCTACTGTGGCTGGACCAAATGGTATTGATCCCATGTCCATGTATTCTGCTGGTTGTGAAATTAACCAACTACAGTGGTCTGCTTCTCAGCCTGACTGGATTGCCATTGCTTTTGCAAACAAGATGCAGCTTTTGAAGGTTTG 1031 0.4704 MENSTQESHLRSENSVTYEFPYPVYSMAISSAPSITSHHQRIAVGSFIEEYANRVDIISFNPETLTVRAQPSLSLDHPYPPTKLMFHPKAHSSLQKSSSDLLATSGDYLRLWEVRENSVETISLLNNSKSSEFCAPLTSFDWNEIEAKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHRASVNAIAWAPQSSRHICSAGDDSQALIWELPTVAGPNGIDPMSMYSAGCEINQLQWSASQPDWIAIAFANKMQLLKV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01877 343 SMART WD40_4 166 204 IPR001680 GO:0005515
Bva12g01877 343 SMART WD40_4 121 163 IPR001680 GO:0005515
Bva12g01877 343 SMART WD40_4 68 113 IPR001680 GO:0005515
Bva12g01877 343 SMART WD40_4 255 295 IPR001680 GO:0005515
Bva12g01877 343 SUPERFAMILY WD40 repeat-like 21 299 IPR036322 GO:0005515
Bva12g01877 343 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 1 343 IPR031104 -
Bva12g01877 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Bva12g01877 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 296 - -
Bva12g01877 343 PANTHER WD REPEAT CONTAINING PROTEIN 1 343 IPR045159 -
Bva12g01877 343 Gene3D - 16 342 IPR015943 GO:0005515
Bva12g01877 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Bva12g01877 343 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Bva12g01877 343 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Bva12g01877 343 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01877 Bva-Chr12 15133680 15134711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01877 K11805 - tcc:18605867 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01877 12 15133680 15134711 Bva12g01877 12 15133680 15134711 ECH