LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g02166	ATGGCGAGACTACTCGAAAAGAAAGCCAAAGAGGCGTTCATCGACGACGACTTCATCCTCGCAGTGAATCTCTACTCTCAAGCCATATACTCGGATCCAAACAATGCCGATCTATTTGCCGATAGAGCTCAGGCTTACATTAAACTCGACAACTTACCTGAAGCGGTTTCTGATGCAAACAAAGCAATCGAATTAAACCCATCAATGGCAAAGGCGTACCTTCGTAAAGGGATTGCGTGTGTTAAGCTTGAAGAATATCATACTGCAAAGGCAGCGCTTGAAATCGGTTCTTCTTTGGCACAAAACGATTCGAGATTCACCAAGTTGATTAAAGAATGTGATGATCATGTTGCTGATGAACCAAATGGTTCCTATTCATGCAATAGGACTgctgagacaaaggaagaagtTACGAGACACAGTTCTGTATCTCAAACAAATGAAGCTATATCAAACAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTATGACAATATTTGCGAAAGGAATACCAGCCAAAAATGTGGTTGTTGAGTTCGGTGAACAGATTTTGAGTGTTACTATTGCTGTTCCCGGTGGAGGTGACTATCAATACCAATCTCGTTTGTTTGGGAAGATAATACCTGACAAGTGCAGATACGAGGTGCTTTCAACCAAAGTTGAAATCCGTCTAGCAAAAGCGGAAGCTATTGATTGGAGGTCTCTTGAATATAGCAATGATACACCACCGAAAGTAATTATGTCGACAAATGGATCTCAAAGGCCTGTATACCCATCATCAAAGCCAACGAGAGATTGGGATAAGCTGGAAGCTCAAGTGAAGAAAGAggagaaagaagaaaagctagATGGTGATGCTGCTTTGAACAAGTTGTTTCGAGACATTTACCAGAATGCGGATGAAGACATGAGGAGAGCAATGAGCAAATCTTTTGTGGAGTCAAATGGAACTGTGCTGTCAACGGACTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGACGGTATGGAACTGAAGAAATGGGAACATTG	1058	0.4064	MARLLEKKAKEAFIDDDFILAVNLYSQAIYSDPNNADLFADRAQAYIKLDNLPEAVSDANKAIELNPSMAKAYLRKGIACVKLEEYHTAKAALEIGSSLAQNDSRFTKLIKECDDHVADEPNGSYSCNRTAETKEEVTRHSSVSQTNEAISNRPKYRHEYYQKPEEVVMTIFAKGIPAKNVVVEFGEQILSVTIAVPGGGDYQYQSRLFGKIIPDKCRYEVLSTKVEIRLAKAEAIDWRSLEYSNDTPPKVIMSTNGSQRPVYPSSKPTRDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFVESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWEH	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g02166	352	MobiDBLite	consensus disorder prediction	249	265	-	-
	Bva11g02166	352	MobiDBLite	consensus disorder prediction	332	352	-	-
	Bva11g02166	352	Gene3D	-	148	256	IPR008978	-
	Bva11g02166	352	CDD	p23_CS_SGT1_like	159	242	-	-
	Bva11g02166	352	PANTHER	PROTEIN SGT1 HOMOLOG	1	351	IPR044563	GO:0051087
	Bva11g02166	352	Pfam	CS domain	157	232	IPR007052	-
	Bva11g02166	352	Pfam	Tetratricopeptide repeat	37	68	IPR019734	GO:0005515
	Bva11g02166	352	SUPERFAMILY	HSP20-like chaperones	144	250	IPR008978	-
	Bva11g02166	352	Gene3D	Tetratricopeptide repeat domain	2	105	IPR011990	GO:0005515
	Bva11g02166	352	MobiDBLite	consensus disorder prediction	249	271	-	-
	Bva11g02166	352	Pfam	SGS domain	270	350	IPR007699	-
	Bva11g02166	352	SMART	tpr_5	36	69	IPR019734	GO:0005515
	Bva11g02166	352	SMART	tpr_5	2	35	IPR019734	GO:0005515
	Bva11g02166	352	SMART	tpr_5	70	103	IPR019734	GO:0005515
	Bva11g02166	352	ProSiteProfiles	SGS domain profile.	262	352	IPR007699	-
	Bva11g02166	352	ProSiteProfiles	CS domain profile.	153	242	IPR007052	-
	Bva11g02166	352	SUPERFAMILY	TPR-like	5	113	IPR011990	GO:0005515
	Bva11g02166	352	PANTHER	PROTEIN SGT1 HOMOLOG A	1	351	-	-
	Bva11g02166	352	ProSiteProfiles	TPR repeat profile.	36	69	IPR019734	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g02166	Bva-Chr11	17728447	17732402	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g02166	K12795		-	zju:107414676	487.263

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g02166	11	17728447	17732402	Bva11g02166	11	17728447	17732402	ECH