LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g02160	ATGGGCGCTCAATTACTGTCTAAGATAGCCACCGGCGACGGACACGGTGAAAACTCCCCATACTTTGATGGCTGGAAAGCATATGAAAATGACCCTTTTCATCTCACCAAGAATGTCCATGGAGTTATCCAGATGGGTCTTGCTGAAAACCAGCTTTCTTTTGACGTGATTCAAGAATGGGTGATGAGTAATCCCAAGGCCTCCATTTGCACATTAGAAGGAGTACGTAATTTCAGTGCCATGGCTAACTTTCAGGAGTACCATGGCTTAACGGAGTTCAGAAATGCCGTGGCTAAATTCATGGCAAGAACCAGAGGAAACAGAGTGGCATTCGACCCTGACCGCATTGTTATGAGCGGTGGAGCAACCGGTGCACACGAGGTCACCGCCTTTTGTTTGGCTGATCCCGGTGATGCCTTTTTGGTTCCCATTCCTTACTATCCAGGTTTTGACCGGGATTTGAGATGGAGAACTGGAGTACAACTTCTTCCAATTATCTGCGATagttcaaataatttcaaagtGACGAAGAGAGCATTGGAAAATGCCTTTGAGAAAGCGAGAGAAGATAGCATCAGAGTTAAAGGCGTGCTTATTACCAATCCATCAAACCCATTAGGGACTACAATGGACAGAGAAACGCTAAGAATTCTAGTGAAGTTTGTTAATGAGAAGAGTATCCACCTGATATGTGATGAAATATATGCTGCTACAGTTTTCTCTAAGCCTGACTTCATAAGCATCGCTGAGATAATAGAGGAAGACATTGATTGTAACTGCGACCTCATCCACATTGTTTACAGTCTTTCTAAGGATATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAACGACGCCGTGGTGGATTGTGCTCGTAAAATGTCAAGCTTTGGATTAGTTTCTACACAGACCCAACATCTTATAGCATCAATGCTATCTGATGACAAATTTGTAGAACGATTCCTCGAAGAAAACGCAAAGCGGCTGGCCAAAAGGTACAAGATTTTCGCTAGAGGGCTTTCACAAGTTGGCATAAACTGCTTGAAGAGTAATGCTGGTCTGTTTTTATGGATGGATTTGCGTAGTCTTCTCAAGAGTCAGACATTTGAAGCAGAAATGGCACTGTGGCGAGTGATCGTTAACCAAGTTAAGATCAATGTTTCGCCTGGTTCTTCTTTTCATTGCAGTGAGCCAGGGTGGTTCAGAGTGTGCTATGCCAACATGGATGATAGGGCTGTTGAAATTGCTCTGACAAGAATCAGCAACTTTGTGCTTCAAAATATGGAGGCCGAGGTTCCTACCAAGAAACAGTGTTGGCAGAGCAACTTAAGGCTAAGCTTCTCATCCAGGATGTTTGATGACATATTGATGTCACCTCACTCCCCAATACCTCAATCGCCTTTGGTTAAAGCCACAACTTG	1430	0.4357	MGAQLLSKIATGDGHGENSPYFDGWKAYENDPFHLTKNVHGVIQMGLAENQLSFDVIQEWVMSNPKASICTLEGVRNFSAMANFQEYHGLTEFRNAVAKFMARTRGNRVAFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPIPYYPGFDRDLRWRTGVQLLPIICDSSNNFKVTKRALENAFEKAREDSIRVKGVLITNPSNPLGTTMDRETLRILVKFVNEKSIHLICDEIYAATVFSKPDFISIAEIIEEDIDCNCDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVDCARKMSSFGLVSTQTQHLIASMLSDDKFVERFLEENAKRLAKRYKIFARGLSQVGINCLKSNAGLFLWMDLRSLLKSQTFEAEMALWRVIVNQVKINVSPGSSFHCSEPGWFRVCYANMDDRAVEIALTRISNFVLQNMEAEVPTKKQCWQSNLRLSFSSRMFDDILMSPHSPIPQSPLVKATT	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g02160	476	Pfam	Aminotransferase class I and II	43	423	IPR004839	GO:0009058\|GO:0030170
	Bva11g02160	476	CDD	AAT_like	89	423	-	-
	Bva11g02160	476	Gene3D	-	65	317	IPR015421	GO:0003824
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	45	71	-	-
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	294	317	-	-
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	78	94	-	-
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	227	250	-	-
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	137	158	-	-
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	191	215	-	-
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	262	286	-	-
	Bva11g02160	476	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	115	135	-	-
	Bva11g02160	476	SUPERFAMILY	PLP-dependent transferases	15	427	IPR015424	-
	Bva11g02160	476	PANTHER	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6	3	438	-	-
	Bva11g02160	476	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	3	438	-	-
	Bva11g02160	476	Gene3D	Aspartate Aminotransferase, domain 1	31	422	IPR015422	GO:0003824
	Bva11g02160	476	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	268	281	IPR004838	GO:0003824\|GO:0009058\|GO:0030170

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g02160	Bva-Chr11	17703249	17705235	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g02160	K20772		-	gmx:100037458	770.385

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g02160	11	17703249	17705235	Bva11g02160	11	17703249	17705235	ECH