Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02069 ATGGATGATGATGACCTTTCTCGCAAACAAAAACTGCCATGTGGTCTCATAACGGGAATAAAGTTTGATGTCTCAACTGAGGATTACATAAATAAGATATCTGCTTTGAAAATTAATGCAGCCAGTCAGGTCAGTTGTTCTGACTTGGGACTTCCAAATTCATCATCAGAATGCTCCACATGTGGTTCTAAAGATTTAAAGTCGTGTGAAGgTCATTTTGGAGTTATTGAATTTCCTTTTACCATAATCCACCCATATTTTCTATCAGAGATAGCAcagattttaaataagatttgCCCTTCATGTAAATCTATTCGACGAATCAAGGGTGCTCATTCAGTATGTAAAAACAAGCAGCCTAAAGGGTGCAAATATTGCACTGGAAGCTCAGTTGGTCAGTGGTatccaaaaatgaaattcaaagtTTCCTCTACTGACCTCTTGAGAAGAACTGCAATTATAGTTGAAATAAGTGACAATCTTTTGAAGAAGAGGAATAGGCTAGTACCTGCTGACTATTGgaattttattccaaaagatgctcaacaagaagaaagttgCATGCGACCCAATAGAAGGGTTTTATCGCATGCTCAGGTTCATTATATGTTGAAAGATGTTGACCCAgagtttattaaaaagtttgtttCAAGGGCGGATATACTTTTTCTTAATAGTTTTCCAGTGACACCAAATTGCCATCGAGTGTCAGAAAGTATGCATGCATCTCCTAATGGAAGTGGATTAATTTATGACGAAAGGACCAGAGCTTGCAAGAAATTGGTTGATTTCAGAGGTACAGCCTTTGAGTTAAGTTCTCGTGTTTTGGACTGCCTACGAATCTCTAAGCTAAATCCTGATAAAACACCAAGTAATAGTTTTGCTGatatacagaaaaaaaagaatgcgGAATTTGTTTGTAATTCATCTGGCTTGAGATGGATGAAAGATGTGATTCTTGGGAAGCGCAATGATCATTGCTTTCGTACAGTGGTTGTTGGTGATCCAGACCTTCAGCTGAATGAAATTGGTATACCTCGTCAAATTGCAGAGAGTTTGCAGGTTTCTGAATATGTGAACAGGCATAATATGGAAAAGTTGCTTGATTTCTGTGAGCTACGTATATTGGAGAAGGGACAGATATATGTCCGCCGAAAAGATAGTCTAGTTGGATTGTCTAAAAAGGGAGAGGTCCGGATTGGAGATATCTTTTATAGACCTTTGATTGATGGAGATACGATTTTAGTAAATAGGCCTCCTTCCATACATCAACATTCTCTAATTGCCCTTTCTGTTAAGGTCCTTCCCATAACATCTGTTGTATCTATAAACCCCATTTGTTGTTCCCCATTCCGTGGGGATTTTGATGGAGATTGCCTTCATGGGTATATTCCTCAATCAGTTGATGCAAGAGTTGAGCTTAATGAGCTTGTTGCTTTAGATAAGCAATTGACTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTAGTCAGGACAGTTTAACTGCTGCTTACTTGCTCATGGAAGATGGGATAGTTTTAAATTCTTACCAAATGCAACAGCTTGAAATGTTTTGTCCTCGTAAGTTGACACTGCCTGCAATTGTAAAAGCTCCTTCACTTGATACTACTTTCTGGACGGGCAAACAATTATTTAGTATGCTCTTGCCTTCTGATTTTCaatattcttttccttcaaattcTGTATTTGTCAAGGATGGGGAGCTTATTACTTCTGAGGGTTCTGCTTGGTTACGTGACTctgacaataatatttttcttagtcTTGTGCAACACTGTCAGGGAAAATCTCTAGATTTCTTGTACGCTGCGCAAAAAGTTCTCTGTGAGTGGCTGTCTATGACGGGTTTTAGTGTTTCACTTTCTGACCTTTACCTATGTTCTGATTCATACTTGCGGAAGAATATGATGGATGAAGTCCTGTGTGGACttgaagaagcaaaatatgCATGTAATTTCAAGCAGTTGTTAGTTGATTCTAATTGCAGTTTCCTCTTGGGATCCACTCAAGAGGATGAAAATGCTATGGCTTTTGAAATGGACCATCTGAATTATGAGAGGCAAATCTCAGCTGCTCTCAGTCAATCTTCAGTGGATGCTTTTAGACAAGTTTTTCGAGAAATTCAAAGTTTAGTATACAAATATGCATGTAATGGTAACAGTTTCCTTGCTATGTTTAAGGCTGGAAGCAAGggtaatttattgaaattagtGCAACATGCCATGTGTGTTGGATTGCAACATTCTTTGGTTCGCTTACCATTTAGAATCCCCCATCAACTGTCATGTGCTGCTTGGAATAGTCAAAGCGGATTTGGTTCAACCCAGACGTTTGATGATACTGCTGACTTTGTTCATTCGTATATTCCATATGCTATTGTTGAAAAATCTTTCCTTTCAGGGTTGAATCCACTTGAGTGTTTTGTTCATTCAGTAACAAGTCGTGATAGTTCCTTCAGTGATAATGCAGATCTTCCTGGGACTTTGACTCGAAGACTTATGTTTTTCATGCGTGATTTGTGCAGTTCATATGATGGAACAGTGAGAAATTCATATGGTAATCAACTTGTTCAGTTCTCATATGATACCGATAAAGACTTATCTTCCAGCAGCTTTGGAAAGCCAGTTGGAGCACTTTCTGCTTGTGCTATTTCTGAAGCAGCATACAGCGCTTTGGACCAACCAATTAGTCTGCTTGAAACATCACCTTTGctcaatttgaaaaatgtaCTGGAGTGTggttcaaagaaaaaaagtgggGACCAAACTGTATCCTTATTTTTGTCCAAGAAACTTGGTAGAGAGAGATATGGGTTTGAATATGGCGCCCTACAAATCAAGAACCATTTGGAGAGACTGATGTTTTCAGATATTGTTTCAACTGTAATGATATTGTACACCCCGCAGACATGTAGTTTCATCCCTTGGGTTTGCCATTTCCATTTACGCAAGGAAATTGTGTGGAgaagaaagttaaaaatgCACTCTATCATTGACTTTCTTGAGCAAGGATATGACTCTATcagaacaaaatcaaaaaactaTCCGTGTTTGAAAATACTGAGCAAGGATTATTCTGTGACTGACAAAGGGTACAAAGGTGAAGATAGTTTTTGCATCACTGTGATGATTGTTGAAATCACCAAGGATTTTGTACAACTGGATTTTGTCCGTGACTCTTTGATACCTGTACTTCTTGGAACAGCTATACAAGGATTCCAAGAGATCAAGAAGGTCAATATCTTGTGGAATAATCGGTCAAAAGTGTCAAAATCTGATTTTGGTTCTTCTGGTGAACTATATTTGAGGGTTACTATGTCCGGCAACAGTAGCAATGGAAGATTCTGGAGTGCACTTATGGATCACTGTCTCGAGATAATGCATTTGATTGATTGGGCACGTAGTCATCCAGATAATATTCATCATGTCTGTTCAGCCTATGGAATAGATGCTGGGTGGAAATATTTTCTCCATAGTTTGGAATCTGCAATATCTGATACTGGCAAGACAATCCTTCCTGAGCATTTGCTTCTTGTTGCCAATAGTCTATCAGCTACCGGGGAGTTTGTGGGACTGAATGCTAAAGGCTTggcaaaacaaagaaaacaagcatCTGTTTCACCACCCTTTGTCCAAGCATGCTTTTCTAATCCTGGTAGTTGCTTTATAAAAGCTGCTAAGGTTGGAGTGATGGATCATCTCCAAGGTAGCCTGGATGAATTGGCTTGGGGGAAATGTCCTTCTATTGGGACAGGTGGGCagtttgatataatatattctgagaagggACATGAAGTTGCTAAGTCTGTAAATGTCTATAACCTGCTGGAGGCCAGTTCTGATGAGCTGAATGAAGAGATTGCAACCCCTGAAGCTCAAAACTACATATCTGACAAATGTGATACTAAGTATAGAAAAGGTAGTTATCATTTGAAAAGCCTCGAAAAGTTGGAAATATGGAGGTGGTTACTGACTGTAGATGATATTCAGAAGCTGACACATTTGTCTAGGCGCATATTGAACAAGCACTCTATTGATGAGAAACTAAGTGAAAGGGACAAGTCGACAATGATGAGTGCTTTGTATTTTCATcctcataaaaataagaagattgGCACTGGAGTACAGGACATAAAGGTTGGGTGGCATCCTGTATATCAGAATACACGGTGCTTCCAAATTGTACGGACGGATGGGACTGTTGAAGATTTTTCATACCATAAGTGCATTGAACGTGCATATGAGATCATTGACCCAGAAAGGGCAAAGAgctataagaataaatatttggTTTATGCTCTTTCTGGAAGCTGTACATTCTCAAATCAAGGAGAACGTCGTGCAGAATATGGGGAGTA 4379 0.3647 MDDDDLSRKQKLPCGLITGIKFDVSTEDYINKISALKINAASQVSCSDLGLPNSSSECSTCGSKDLKSCEGHFGVIEFPFTIIHPYFLSEIAQILNKICPSCKSIRRIKGAHSVCKNKQPKGCKYCTGSSVGQWYPKMKFKVSSTDLLRRTAIIVEISDNLLKKRNRLVPADYWNFIPKDAQQEESCMRPNRRVLSHAQVHYMLKDVDPEFIKKFVSRADILFLNSFPVTPNCHRVSESMHASPNGSGLIYDERTRACKKLVDFRGTAFELSSRVLDCLRISKLNPDKTPSNSFADIQKKKNAEFVCNSSGLRWMKDVILGKRNDHCFRTVVVGDPDLQLNEIGIPRQIAESLQVSEYVNRHNMEKLLDFCELRILEKGQIYVRRKDSLVGLSKKGEVRIGDIFYRPLIDGDTILVNRPPSIHQHSLIALSVKVLPITSVVSINPICCSPFRGDFDGDCLHGYIPQSVDARVELNELVALDKQLTNGQSGRNLLSLSQDSLTAAYLLMEDGIVLNSYQMQQLEMFCPRKLTLPAIVKAPSLDTTFWTGKQLFSMLLPSDFQYSFPSNSVFVKDGELITSEGSAWLRDSDNNIFLSLVQHCQGKSLDFLYAAQKVLCEWLSMTGFSVSLSDLYLCSDSYLRKNMMDEVLCGLEEAKYACNFKQLLVDSNCSFLLGSTQEDENAMAFEMDHLNYERQISAALSQSSVDAFRQVFREIQSLVYKYACNGNSFLAMFKAGSKGNLLKLVQHAMCVGLQHSLVRLPFRIPHQLSCAAWNSQSGFGSTQTFDDTADFVHSYIPYAIVEKSFLSGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCSSYDGTVRNSYGNQLVQFSYDTDKDLSSSSFGKPVGALSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKKSGDQTVSLFLSKKLGRERYGFEYGALQIKNHLERLMFSDIVSTVMILYTPQTCSFIPWVCHFHLRKEIVWRRKLKMHSIIDFLEQGYDSIRTKSKNYPCLKILSKDYSVTDKGYKGEDSFCITVMIVEITKDFVQLDFVRDSLIPVLLGTAIQGFQEIKKVNILWNNRSKVSKSDFGSSGELYLRVTMSGNSSNGRFWSALMDHCLEIMHLIDWARSHPDNIHHVCSAYGIDAGWKYFLHSLESAISDTGKTILPEHLLLVANSLSATGEFVGLNAKGLAKQRKQASVSPPFVQACFSNPGSCFIKAAKVGVMDHLQGSLDELAWGKCPSIGTGGQFDIIYSEKGHEVAKSVNVYNLLEASSDELNEEIATPEAQNYISDKCDTKYRKGSYHLKSLEKLEIWRWLLTVDDIQKLTHLSRRILNKHSIDEKLSERDKSTMMSALYFHPHKNKKIGTGVQDIKVGWHPVYQNTRCFQIVRTDGTVEDFSYHKCIERAYEIIDPERAKSYKNKYLVYALSGSCTFSNQGERRAEYGE 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02069 1459 Gene3D RNA polymerase Rpb1, domain 3 488 634 IPR042102 -
Bva11g02069 1459 Pfam RNA polymerase Rpb1, domain 2 321 478 IPR000722 GO:0003677|GO:0003899|GO:0006351
Bva11g02069 1459 Gene3D - 316 487 - -
Bva11g02069 1459 Gene3D - 846 887 - -
Bva11g02069 1459 Gene3D - 1333 1422 - -
Bva11g02069 1459 Pfam RNA polymerase Rpb1, domain 4 695 760 IPR007083 GO:0003677|GO:0003899|GO:0006351
Bva11g02069 1459 Pfam RNA polymerase Rpb1, domain 1 42 235 IPR007080 GO:0003677|GO:0003899|GO:0006351
Bva11g02069 1459 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 3 1331 - -
Bva11g02069 1459 SMART rpolaneu7 220 508 IPR006592 GO:0003677|GO:0003899|GO:0006351
Bva11g02069 1459 Gene3D RNA polymerase II, clamp domain 7 119 IPR044893 -
Bva11g02069 1459 CDD RNAP_IV_RPD1_N 25 856 IPR040403 -
Bva11g02069 1459 Pfam RNA polymerase Rpb1, domain 3 486 631 IPR007066 GO:0003677|GO:0003899|GO:0006351
Bva11g02069 1459 Gene3D RNA polymerase ii 354 406 - -
Bva11g02069 1459 Pfam Protein of unknown function (DUF3223) 1344 1417 - -
Bva11g02069 1459 PANTHER DNA-DIRECTED RNA POLYMERASE 3 1331 IPR045867 GO:0003899|GO:0006351
Bva11g02069 1459 Gene3D - 673 809 IPR038120 -
Bva11g02069 1459 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 12 1266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02069 Bva-Chr11 17302869 17316440 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02069 K16250 - gmx:100810483 1890.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02069 11 17302869 17316440 Bva11g02069 11 17302869 17316440 ECH