Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02057 ATGGATGATTCAACAGTTTCGTCATCGTTAACTCCCCAATCAACTCTCGCAACTCCTCCTTCCCCTTCTTCTCAGCTCACTCTACCTCCTGATATATCTCGACCCTCTCTCTCCCTTGACAACCTAACCCCTTCTCCTCACGTCGACCGTATGATAAACTCCAATCACTATAAATCCCCTTCCAGACCAATCTACTCTGATAGGTTCATACCTAGCAGATCTGGCTCCAATTTCGCTCTCTTCAATATACCGCCGCCAACGAATTCTCCAGCAGAGGGACGTGAGGACAGTTCTAGTACCTACACCACCCTCTTGCGCGCTGCATTATTTGGACCTGATACTGGAGTCGTACCTCCGGTGACACCCGAAAAAAGGAGCCTCTCTATAAACCCGCCAAGTCGAAACATTTTCCGTTATAAAACAGAAACTCGACAGCCTATGCACTCTCTTTTGCCGTTTGTATATGATGATGTTGTTACCGGGGCTACTCATAGCCCAGTTAAGACTCCTAGGAAGGTTCCACGGTCACCTTATAAGGTTTTGGATGCTCCCGCATTGCAAGATGATTTTTATCTCAATCTTGTGGATTGGTCTTCGCATAATGTATTGGCTGTGGGGTTGGGTAACTGCGTCTATTTGTGGAATGCTTGTAGTAGCAAGGTAACTAAATTATGTGACTTGGGGATTGACGATAGCGTTTGTTCAGTTGGCTGGGCTCAGCGCGGTACACATCTTGCTGTTGGAACCAGCAATGGCAAAGTCCAGATCTGGGATGCATCTCGTTGCAAGAAGATAAGAACCATGGAAGGTCATCGCTTACGCGCTGGAGCCTTGGCCTGGAGTTCATCTCTCCTGTCTTCTGGTGGCCGGGATAAGAATATTTACCAACGAGATATACGGGcacaagaagattttgttAGTAAATTGTCAGGACACAAGTCAGAGgTTTGTGGGCTGAAGTGGTCTTATGATAACCGTGAATTGGCATCTGGAGGAAATGATAACAGACTGTTTGTCTGGAATCAACACTCTACTCAACCTGTCCTGAAGTTCTGTGAGCATACAGCAGCCGTTAAAGCTATTGCGTGGTCTCCCCATCTTCACGGACTTCTTGCATCCGGGGGAGGAACTGCTGACCGGTGTATTCGTTTCTGGAATACAACCACAAACTCACACTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTCGTCTGGtctaaaaatgtaaatgaacTGGTAAGCACACATGGTTATTCCCAGAACCAGATAATAGTTTGGAGATACCCCAACATGTCAAAGCTGGCAACTCTTACAGGTCATACATATAGGGTCCTTTATCTTGCCATCTCTCCTGATGGACagACAATTGTCACCGGAGCTGGAGATGAGACGCTTAGGTTTTGGAATGTATTTCCTTCCCCAAAATCTCAGAATACCGACAGTGAAATTGGAGCATCATCTCTCGGAAGAACTACTATTAGGTG 1490 0.4564 MDDSTVSSSLTPQSTLATPPSPSSQLTLPPDISRPSLSLDNLTPSPHVDRMINSNHYKSPSRPIYSDRFIPSRSGSNFALFNIPPPTNSPAEGREDSSSTYTTLLRAALFGPDTGVVPPVTPEKRSLSINPPSRNIFRYKTETRQPMHSLLPFVYDDVVTGATHSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRTMEGHRLRAGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPNMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTTIR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02057 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 350 IPR001680 GO:0005515
Bva11g02057 496 Gene3D - 167 476 IPR015943 GO:0005515
Bva11g02057 496 SMART WD40_4 261 298 IPR001680 GO:0005515
Bva11g02057 496 SMART WD40_4 432 471 IPR001680 GO:0005515
Bva11g02057 496 SMART WD40_4 218 258 IPR001680 GO:0005515
Bva11g02057 496 SMART WD40_4 174 215 IPR001680 GO:0005515
Bva11g02057 496 SMART WD40_4 344 386 IPR001680 GO:0005515
Bva11g02057 496 SMART WD40_4 302 341 IPR001680 GO:0005515
Bva11g02057 496 Pfam WD domain, G-beta repeat 306 341 IPR001680 GO:0005515
Bva11g02057 496 Pfam WD domain, G-beta repeat 346 386 IPR001680 GO:0005515
Bva11g02057 496 Pfam WD domain, G-beta repeat 435 471 IPR001680 GO:0005515
Bva11g02057 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 439 472 - -
Bva11g02057 496 MobiDBLite consensus disorder prediction 477 496 - -
Bva11g02057 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 341 - -
Bva11g02057 496 MobiDBLite consensus disorder prediction 1 68 - -
Bva11g02057 496 ProSitePatterns Trp-Asp (WD) repeats signature. 458 472 IPR019775 -
Bva11g02057 496 Pfam Anaphase-promoting complex subunit 4 WD40 domain 228 282 IPR024977 -
Bva11g02057 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Bva11g02057 496 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 21 496 IPR033010 GO:0010997|GO:0097027|GO:1904668
Bva11g02057 496 SUPERFAMILY WD40 repeat-like 182 471 IPR036322 GO:0005515
Bva11g02057 496 PANTHER PROTEIN FIZZY-RELATED 1 21 496 - -
Bva11g02057 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 472 IPR001680 GO:0005515
Bva11g02057 496 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02057 Bva-Chr11 17244250 17248889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02057 296 472 Miscellaneous Gene Families AT5G08390 23.596 9.00e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02057 K03364 - mnt:21405920 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02057 11 17244250 17248889 Bva08g00234 08 1134475 1139795 BWGD
Bva11g02057 11 17244250 17248889 Bva11g02057 11 17244250 17248889 ECH