Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02033 ATGGCGATTGCACCTTATGCGACCGCATCAACACAGTGTGTTTGTCCTCCTTCAAGTTGTCGGACAAAGCTTTATTCAGGACTGAAGCTTCAATCAGAAAGCCTTCCTGGAGCAGGCAAACCTAACTTGACCGCTGAATTTTACGGAAAAGTTCACAGGAGTCTACAGTGCCGGTCTGGTAGCCATAAACCAGTGAGGGCACAAATTCGGATGATGCCCATAGGGACCCCTAGAGTGCCCTATAGAACGCCTGGTGAGGGAACCTGGCAATGGGTTGATTTATGGAATGCCCTTTATCGGGAACGTGTCGTCTTCATTGGACAAGAAATAGACGAAGAATTTAGCAACCAAATATTAGCATCCATGCTATATCTTGACAGTGTAGATAACGCCAAGAGGCTCTACATGTACATAAATGGTCCTGGTGGTGACCTTACACCAAGCTTGTCTATCTTCGACACCATGCAAAGCTTACAGAGTCCTGTTACCACCCATTGTGTTGGCTATGCTTATAATCTAGCAGCATTCCTTCTTGCAGCAGGGGAAAAGGGCAACCGATTTGCAATGCCTCTTGCAAGAATTGCTCTCCAGTCTCCAGCAGGAGCTGCTCGTGGTCAGGCTGATGATATTCGTAATGAAGCAAATGAACTTCTTAGAATCAGAGATTACCTTTACAATGAGTTGGCGAAGAAAACGGGCCAGCCTGTAGATAAGATTTTCAAAGACTTGAGCAGGATTAAACGCTTCAATGCACAGGAAGCTCTGAATATGGGTTG 776 0.4588 MAIAPYATASTQCVCPPSSCRTKLYSGLKLQSESLPGAGKPNLTAEFYGKVHRSLQCRSGSHKPVRAQIRMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVVFIGQEIDEEFSNQILASMLYLDSVDNAKRLYMYINGPGGDLTPSLSIFDTMQSLQSPVTTHCVGYAYNLAAFLLAAGEKGNRFAMPLARIALQSPAGAARGQADDIRNEANELLRIRDYLYNELAKKTGQPVDKIFKDLSRIKRFNAQEALNMG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02033 258 CDD S14_ClpP_2 93 258 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva11g02033 258 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 12 258 - -
Bva11g02033 258 Gene3D - 76 258 - -
Bva11g02033 258 PRINTS Clp protease catalytic subunit P signature 133 153 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva11g02033 258 PRINTS Clp protease catalytic subunit P signature 242 258 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva11g02033 258 PRINTS Clp protease catalytic subunit P signature 93 108 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva11g02033 258 PRINTS Clp protease catalytic subunit P signature 164 181 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva11g02033 258 PRINTS Clp protease catalytic subunit P signature 185 204 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva11g02033 258 SUPERFAMILY ClpP/crotonase 86 258 IPR029045 -
Bva11g02033 258 Pfam Clp protease 90 258 IPR023562 -
Bva11g02033 258 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 12 258 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02033 Bva-Chr11 17142605 17145974 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02033 K01358 - gmx:100800113 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02033 11 17142605 17145974 Bva11g02033 11 17142605 17145974 ECH