LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g01940	ATGGCGACAATAGACAAAAGCGCCTCTGCTAAAAGATGGCTTCCTCTTGAAGCTAACCCTGACGTGATGAACCAGTACCTTTGGGGTCTTGGCCTTCCGCAGGACGAGGCTGAGTGCTTTGATGTGTACGGTTTAGATGAAGAACTTTTGGAAATGGTTCCAAAGCCTGTGGTTGCTGTGCTTTTCCTTTATCCGATAACCTCAAAGaCTGAAGAGGAGAGGTTGCAACAGGAAAACGAAAAAAAGGAATACAGCAATGGAGTGTATTTTATGAAGCAAACAGTGGGCAATGCTTGTGGTACGGTAGGACTTCTTCATGCTCTTGGGAACTTAACTAATGAGATCAAGCTTGGGTCGTTCTTTGATAGGTTCTTTAAATCCACTGCGAGCATGGATCCATTACAGCGGGCAACATTTCTTGAGAATGACAGAGAAATGGAACTTGCTCATTCAATAGCAGCCACTGCTGGTGATACAGAGGCATCAGACAATGCAGACGCTCACTTCATCTGCTTTGCTTGCGTTGATgGTGAACTTTATGAGCTCGATGGAAGAAAATCTTGGCCAATATCTCATGGAGCCTCCTCTCCTAGTACTTTGTTGGGGGATGCAGCTAAAGTCATACAGAGCATGATCCAGAAAAATCCTGACTCCCTCAACTTCAACGTCATTGCTATTTCAAAGAAATCAGTCTA	695	0.4432	MATIDKSASAKRWLPLEANPDVMNQYLWGLGLPQDEAECFDVYGLDEELLEMVPKPVVAVLFLYPITSKTEEERLQQENEKKEYSNGVYFMKQTVGNACGTVGLLHALGNLTNEIKLGSFFDRFFKSTASMDPLQRATFLENDREMELAHSIAATAGDTEASDNADAHFICFACVDGELYELDGRKSWPISHGASSPSTLLGDAAKVIQSMIQKNPDSLNFNVIAISKKSV	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g01940	231	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	7	229	IPR001578	GO:0004843\|GO:0006511
	Bva11g01940	231	SUPERFAMILY	Cysteine proteinases	11	228	IPR038765	-
	Bva11g01940	231	Gene3D	-	7	229	IPR036959	GO:0004843\|GO:0006511
	Bva11g01940	231	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	7	229	-	-
	Bva11g01940	231	Pfam	Ubiquitin carboxyl-terminal hydrolase, family 1	13	212	IPR001578	GO:0004843\|GO:0006511
	Bva11g01940	231	CDD	Peptidase_C12_UCH_L1_L3	13	226	-	-
	Bva11g01940	231	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	15	32	IPR001578	GO:0004843\|GO:0006511
	Bva11g01940	231	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	163	174	IPR001578	GO:0004843\|GO:0006511
	Bva11g01940	231	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	93	110	IPR001578	GO:0004843\|GO:0006511
	Bva11g01940	231	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	179	189	IPR001578	GO:0004843\|GO:0006511
	Bva11g01940	231	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	53	65	IPR001578	GO:0004843\|GO:0006511

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g01940	Bva-Chr11	16643199	16647108	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g01940	K05609		-	gmx:100527718	406.371

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g01940	11	16643199	16647108	Bva11g01940	11	16643199	16647108	ECH