Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01920 ATGGGCTGCATTTACTCTACAGCAGGAAGACACTTTCCTAGGCATGAGAACCCTGTACTACTTGCATCACAGACAGCTTtcACTGTTAGTGAGGTTGAAGCACTGTTTGAACTTTTCAAGAGCATCAGCAGTGCTGTGATTGATGATGGATTAATAAGCAAGgaAGAATTCCAGTTGGCAATTttcaagaataagaaaaaggaaaatctgtTTGCAAATCGGGTCTTTGATCTCTTTGATGTTAAGAAGAAGGGAGTCATTGATTTTGGTGACTTTGTTAGATCACTCAATGTCTTCCACCCTAATGCACCACAAGAAGACAAGATAGATTTTTCCTTTAGGCTTTATGATTTGGATAACACAGGCTTTATAGAGCGTCAAGAGGTCAAGGAAATGTTAATTGCACTTCTCTGTGAGTCTGACATGAAGTTGGCTAACGAGACAATAGAAACAATTCTTGATAAGACGTTCTTGGATGCTGACGTGAAACAAGATGGTAAAATAGACAAGTCTGAATGGCAGAACTTCGTTTCAAAAAGTCcatcaatattaaaaataatgactcTGCCGTATCTGAGGGAAATAACAACATCATTTCCaagttttgtatttaattctGAGGTTGATGAAACTGCTACGAAACTGTA 647 0.3524 MGCIYSTAGRHFPRHENPVLLASQTAFTVSEVEALFELFKSISSAVIDDGLISKEEFQLAIFKNKKKENLFANRVFDLFDVKKKGVIDFGDFVRSLNVFHPNAPQEDKIDFSFRLYDLDNTGFIERQEVKEMLIALLCESDMKLANETIETILDKTFLDADVKQDGKIDKSEWQNFVSKSPSILKIMTLPYLREITTSFPSFVFNSEVDETATKL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01920 215 Gene3D - 19 211 - -
Bva11g01920 215 SUPERFAMILY EF-hand 22 202 IPR011992 -
Bva11g01920 215 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Bva11g01920 215 PRINTS Recoverin family signature 168 188 - -
Bva11g01920 215 PRINTS Recoverin family signature 75 96 - -
Bva11g01920 215 PRINTS Recoverin family signature 122 140 - -
Bva11g01920 215 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Bva11g01920 215 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Bva11g01920 215 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Bva11g01920 215 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Bva11g01920 215 CDD EFh 108 178 IPR002048 GO:0005509
Bva11g01920 215 Pfam EF-hand domain pair 107 177 IPR002048 GO:0005509
Bva11g01920 215 PANTHER CALCINEURIN B-LIKE MOLECULE 1 213 - -
Bva11g01920 215 SMART efh_1 108 136 IPR002048 GO:0005509
Bva11g01920 215 SMART efh_1 71 99 IPR002048 GO:0005509
Bva11g01920 215 SMART efh_1 152 180 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01920 Bva-Chr11 16547008 16551598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01920 1 213 EF-hand Containing Proteins AT4G17615 78.873 3.43e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01920 K06268 - vvi:100243294 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00389 08 1944905 1949024 Bva11g01920 11 16547008 16551598 BWGD
Bva11g01920 11 16547008 16551598 Bva11g01920 11 16547008 16551598 ECH