Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01912 ATGGCTTTAATGCTTCGTTCTTCAACTTCTTTCATTAATCAGATAGAAACCAAAGGCCTCAAATCTTGTGATGACTTACCTGCCGCAATCTGCTTTGCAAAAAGTAAGCCATGGTTTCGTCTTCGAGCCAAGAGCTCAATGCAAGAATCACATGTGAATAGCGACTTGAACCCTGAAGCAAGGAGAAACGAGAAATGGGAGAAGCTGCATGGACCAACAGTTTCTCGTAATAATCACAATGATTCGAAGAGGGTACCTGTGTTTGTGATGCTGCCATTAGACACAGTAACAATTGGTGGGACTTTGAATAAGCCACGAGCAATGAATGCGAGTTTGATGGCACTCAAGAGTGCAGGAGTTGAAGGAGTAATGGTAGATGCTTGGTGGGGTTTGGTGGAGAAAGATGGACCTCTCAAATACAACTGGGAAGCCTATGCTGAGCTTGTGGAAATGGTACAGAAACATGGCTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGCGGAGGAAATGTTGGAGATTCTTACAACATTCCTTTGCCACCATGGGTGCTTGAAGAAATCAGCAAGAACCCTGACTTAGTTTACACAGACAAATCAGGGAGGAGGAACCCTGAGTACATCTCCTTGGGTTGTGATTCAATGCCCGTTCTAAGAGGAAGGACGCCCATTCAGGTCTACTCTGATTATATGAGAAGCTTCCATGACAGGTTCAGGGACTACTTGGGTACTGTGATCATCGAAATTCAAGTGGGTATGGGTCCCTGTGGAGAGCTTAGATATCCATCTTATCCGGAAAGCAACGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTACGACAAGTACATGGGAGCTTCATTGGAAGCATCAGCAGAGGCGACtgggaagagagattggggAAGAAGTGGTCCCCATGATTCGGGTCAGTACAATCAATTTCCAGAGGATACTGGATTTTTCAGAAGGGAAGGAACATGGAACTCTGACTATGGACAATTCTTCCTCGAATGGTACTCAGGTAAACTATTGGAACACGGTGAGAAGATCCTTGCATCTGCCAAAAGAATTTTCCAAATATCTGGTGTGAAACTATCTGGGAAAATTGCTGGAATCCACTGGCATTACAGAACAAGGTCACACGCTGCTGAATTAACTGCTGGGTACTATAATACAAGATTCCGTGATGGTTACATTTCCATAGCTCAAATGCTAGCAAAACATGGAGttgtcttcaatttcactTGTATGGAAATGAAAGACAGAGAGCAGCTTGAACATGCCAATTGCTCACCCGAAGGCTTAGTTCATCAAGTAAAGATGGCGACCAGGGCAACTGGGGCAGACCTTGCTGGGGAGAACGCATTGGAGAGATATGATTCAGATGCATATGCTCAAGTATTGGCAACAAGTAGGTCAGACTCTGGTAATGGATTGTGCGCATTTACATATTTAAGAATGAACAAGAATTTGTTTGAAGGTGATAACTGGAGACACCTAGTAGACTTCGTCAGAAGCATGTCTGAAGGTGGACGGAGACAAAGACTACCAGACACTGATTCCCAGGGGACCGATCTTTACGTTGGACACATCATAGGGACAGAGAAGAAAGCTCAAGAGGTTGTGTATAGCTA 1640 0.4341 MALMLRSSTSFINQIETKGLKSCDDLPAAICFAKSKPWFRLRAKSSMQESHVNSDLNPEARRNEKWEKLHGPTVSRNNHNDSKRVPVFVMLPLDTVTIGGTLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEAYAELVEMVQKHGLKLQVVMSFHQCGGNVGDSYNIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDSMPVLRGRTPIQVYSDYMRSFHDRFRDYLGTVIIEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMGASLEASAEATGKRDWGRSGPHDSGQYNQFPEDTGFFRREGTWNSDYGQFFLEWYSGKLLEHGEKILASAKRIFQISGVKLSGKIAGIHWHYRTRSHAAELTAGYYNTRFRDGYISIAQMLAKHGVVFNFTCMEMKDREQLEHANCSPEGLVHQVKMATRATGADLAGENALERYDSDAYAQVLATSRSDSGNGLCAFTYLRMNKNLFEGDNWRHLVDFVRSMSEGGRRQRLPDTDSQGTDLYVGHIIGTEKKAQEVVYS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01912 546 Pfam Glycosyl hydrolase family 14 88 505 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 Gene3D Glycosidases 74 545 - -
Bva11g01912 546 ProSitePatterns Beta-amylase active site 1. 166 174 IPR018238 GO:0000272|GO:0016161
Bva11g01912 546 PANTHER BETA-AMYLASE 1 542 - -
Bva11g01912 546 SUPERFAMILY (Trans)glycosidases 83 512 IPR017853 -
Bva11g01912 546 PRINTS Plant beta-amylase signature 244 253 IPR001371 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Plant beta-amylase signature 485 499 IPR001371 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Plant beta-amylase signature 403 413 IPR001371 GO:0000272|GO:0016161
Bva11g01912 546 PANTHER - 1 542 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 437 459 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 119 133 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 162 183 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 254 276 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 329 348 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 382 393 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 140 158 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 365 381 IPR001554 GO:0000272|GO:0016161
Bva11g01912 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 400 423 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01912 Bva-Chr11 16509806 16512802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01912 1 535 Glycoside Hydrolase AT4G17090 71.933 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01912 K01177 - gmx:100818063 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01912 11 16509806 16512802 Bva11g01912 11 16509806 16512802 ECH