Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01905 ATGGACTCGCACCAGAGCAATCTATTCGAAACCGCTTCGCAGCCCGACACTGGCAACGACGCCTACACTTTTCTTGAATTTAACACTCAGGGGGAGGATTTCGACTATCCTGAGTTCCGTGACCCCTTAAGGTCATCGGTCCCATGGCCTACTCCGTCCGATTCGCTATCCGACCCCACCGAACGTGGTGGTGGAGGGGGTTCTGGGTCTGATCACCAGTCCGATGCCTCTCCCGTCTCAGCAGCACCGGGAAGTGCCACTAAAAGCCGGGCAGCTGGGTCGAGCAGCAGCAGCGGCAACAACCAGATGGTGGACGCCCTGGCGGCTGGCATGGGCGgcttaaattttgaagatacTGTGGATGACGAGAATTACGAGTATGGTAAAGGAGATTTCACTGAACATGCATGCCGATATTGTGGGGTGTCGAACCCGGCTTGTGTTGTGAGGTGTAATGTGCCATCATGCCGCAAATGGTTCTGCAATTCGAGGGGAAACACGTCCGGTTCACATATTGTAAATCACCTGGTTCGAGCAAAACATAAAGAAGTCTGTCTTCACAAAGATAGTCCCTTAGGAGAAACAATCCTTGAATGCTACAATTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACAGAAAGTGTGGTTGTTCTTCTTTGTCGTGAGCCTTGCTTGAGTGTTAACGCGTTGAAGGACATGAATTGGGACCTTAGCCAATGGTGTCCGCTGATAGATGATCGGTGTTTCTTGCAATGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTGAGAGCACGCCAGATAAGTGCGCAGCAAATAAATAAGGTAGAAGAGCTTTGGAAGACAAATCCTGATGCTTCTCTGGAGGACCTTGAAAAGCCTGGTGTGGATGATGAACCTCAGCCCGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAACGTGTTTGCACCTCTTATTAAACTCGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTTACGATTCGATGGGATATTGGTCTTAATAAGAAGCGCATTGCATACTTTGTCTTCCCAAAGGAAGATAATGAATTGCGGTTAGTACCTGGTGATGAATTAAGATTGCGTTATTCCGGAGATGCTGCACATCCAGCATGGCAGTCCGTGGGGCACGTGATTAAGCTGACTGCACAAGAGGAGGTTGCACTTGAGCTTCGTGCTAGTCAGGGTGTACCAGTTGATGCAAACCATGGTTTCAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGACAGAGAGCAAGGAGCAATGAAAACCTTTGCTGTTGATGAGACAAGTGTTAGTGGGTATATTTACCATCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATACATTGCCTCGTCGTTTTGGTGCACCAGGACTTCCAGAGCTCAATGCATCACAAGTTTTTGCAGTTAAGAGTGTTCTTCAGAGACctattagtttaattcaaggtCCTCCTGGAACTGGTAAGACTGTAACTTCTGCGGCAATTGTATACCACATGGCAAAACAAGGTCAAGGGCAGgtTTTGGTTTGTGCCCCTAGTAATGTCGCTGTGGACCAGCTAGCTGAAAAGATTAGTGCTACTGGGTTAAAGGTTGTTAGGCTTTGTGCAAAATCAAGGGAAGCCGTGAGTTCTCCTGTTGAGCATTTAACACTTCATTATCAGGTTCGACATCTTGACACATCTGACAAAAGTGAACTTCACAAGTTACAACAACTGAAAGACGAGCAAGGGGAACTTTCCAGTAGTGATGAGAAAAAGTATAAAGCACTTAAACGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGCACTTGTGTTGGTGCTGGAGATCCTCGACTGGCTAACTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAGGCAACCGAACCTGAATGCCTCATTCCCTTGGTTCTTGGGGCCAAGCAGGTTGTTCTTGTTGGTGATCATTGCCAGCTTGGTCCTGTTATCATGTGCAAGAAAGCAGCTCGTGCAGGTCTAGCACAGTCACTTTTTGAACGCCTTGTTCTACTTGGTCTCAAACCAATTAGATTGCAGGTTCAATACCGAATGCATCCATCTCTTTCAGAATTTCCCTCAAACAGCTTCTATGAAGGCACCCTACAAAATGGAGTCACTGTTAATGAAAGGCAATCGTCAGGAATTGATTTTCCCTGGCCTGTGCCAAACCGTCCCATGTTTTTTTATGTCCAGATGGGTCAAGAAGAGATAAGTGCAAGTGGAACATCTTATTTAAATAGGACTGAGGCAGCAAACGTTGAGAAGATTGTGACAACTTTCTTAAGGAGTGGTGTAGTCCCTAGTCAGATTGGCGTGATAACACCTTATGAAGGACAGAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTTAGGCAGCAACTTTACAAGGAGATTGAGgTTGCTAGCGTTGATTCATTTCAAGGAAGGGAAAAAGACTACATTATTTTATCGTGTGTTAGAAGTAACGAGCATCAGGGCATTGGATTTCTGAATGATCCTCGGAGGCTTAATGTTGCTTTGACACGAGCTAGATATGGTATTGTTATTCTGGGTAATCCTAAAGTTCTCAGTAAACAGCCTCTTTGGAACAGTTTATTGACACATTATAAGGAGCATGAATGCTTGGTTGAGGGGCCTTTGAATAACTTGAAGCAAAGTATGGTTCAGTTTCAGAAGCCTAAGAAGATCTACAATGATAGAAGGCTTTTTTATGGTGGTGGACCTGGTGTTGTGCCTAATGATAATTTTGGCTCTGGCCCAACGTCAGACCGGAGGAGTAGCCGTGGAAGGGGATCTTATATACCTTCTGGGCCCCCAAATGGAACCCATAAGCCTGGAGTTCATCCTGCTGGGTATGCAATGCCAAGAGTCCCCCTGCCACCTTTCCATGGTGGTCCCCAGTCTCAGCCATATGCAATTCCAGCTCGTGGAGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTCCCACCTCCAGGGAGTCGGGGTTTTGGGGCTGGGCGAGGTAATACTGGTGCTGCAATTGGCAGCAATCATGTCTCACACCAGCAAGGCACACAGCAGCCTATTGGGAATCTTGGATCTACCTTTAATTTCCCATCTCTTGAAAATCCCAGCAGCCAGCCATCTGTTGGTGGTCCATTATCTCAACCTGGGTTCGCAAATAATATGCCAGTCCAAGGGCCAAGCCAGTCATTCCGAGATCAATTTTCTGTTGCAGGAATGTCCCAGGATTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTGACTGATTTCTCCACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGTTACTCAAGGAGCACAAGGTGGATTTCCAGGGAACTTTCTGAACCAGAATTCTCAGGCTGGATATTCACGTTTTGGTTCTGGAAATGATTTTATGTCTCAGGATTACATGGCTCATGGATCACATGGTCTTTTCACTCAGGTTGGCTTCAACGAAACTTCACAAGATGATACACCACAGAGCCATTTTGGTGTGGCTAATGCTAACCCTCTTCAATCTCAGGGCCTGATGAATTCTCTCTACTCCCAGCCCTTTGCTCATTATAATACACAGCCACTGAACTTGCAGGCTTCCCAACAGCAGCCTCAAGGTCAGAGCTCCCAGAATCAGAAAATCCACTATAACGGTTA 3803 0.4557 MDSHQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPLRSSVPWPTPSDSLSDPTERGGGGGSGSDHQSDASPVSAAPGSATKSRAAGSSSSSGNNQMVDALAAGMGGLNFEDTVDDENYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDANHGFSVDFVWKSTSFDREQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVVPNDNFGSGPTSDRRSSRGRGSYIPSGPPNGTHKPGVHPAGYAMPRVPLPPFHGGPQSQPYAIPARGAVHGPVGAVPHVPPPGSRGFGAGRGNTGAAIGSNHVSHQQGTQQPIGNLGSTFNFPSLENPSSQPSVGGPLSQPGFANNMPVQGPSQSFRDQFSVAGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMAHGSHGLFTQVGFNETSQDDTPQSHFGVANANPLQSQGLMNSLYSQPFAHYNTQPLNLQASQQQPQGQSSQNQKIHYNG 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01905 1267 CDD DEXXQc_UPF1 485 720 - -
Bva11g01905 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 494 626 IPR014001 -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 955 969 - -
Bva11g01905 1267 CDD 1B_UPF1-like 341 428 IPR040812 -
Bva11g01905 1267 PANTHER DNA2/NAM7 HELICASE FAMILY 111 1012 IPR045055 -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 1 100 - -
Bva11g01905 1267 Pfam AAA domain 698 893 IPR041679 -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 1 26 - -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 1047 1095 - -
Bva11g01905 1267 Gene3D - 341 429 - -
Bva11g01905 1267 Gene3D - 449 719 IPR027417 -
Bva11g01905 1267 Gene3D - 571 623 - -
Bva11g01905 1267 Pfam Type III restriction enzyme, res subunit 491 553 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bva11g01905 1267 Pfam RNA helicase (UPF2 interacting domain) 135 288 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bva11g01905 1267 Pfam RNA helicase UPF1, 1B domain 340 429 IPR040812 -
Bva11g01905 1267 Gene3D - 720 931 IPR027417 -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 1031 1095 - -
Bva11g01905 1267 Pfam AAA domain 587 688 IPR041677 GO:0004386
Bva11g01905 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 916 IPR027417 -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 70 100 - -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 1247 1267 - -
Bva11g01905 1267 MobiDBLite consensus disorder prediction 948 989 - -
Bva11g01905 1267 CDD SF1_C_Upf1 721 910 IPR041679 -
Bva11g01905 1267 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 111 1012 - -
Bva11g01905 1267 CDD ZBD_UPF1-like 136 258 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01905 Bva-Chr11 16430524 16440683 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01905 K14326 - qlo:115972376 2352.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01905 11 16430524 16440683 Bva11g01905 11 16430524 16440683 ECH