Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01900 ATGACAGCGTCTTCCGAGAACTGCGTGGAAAGTAAGACTTCTCTCGCCGGGCTTGCTCCACTCGAAGCAGTGCTATTTGATATTGATGGAACTCTTTGTGATTCAGATCCACTCCACTACTATGCTTTTCGTGAAATGCTTCAAGAGATTGGCTTCAATGGGGGTACTCCAATAACAGaggaattttttattgaaactGTTGCTGGCAAACACAATGATGATATTGCCTTGGCTCTCTTTCCTGGTGATCTGCAGCGGGGTTTGAAGTTTGTAGATGACAAGGAAGCCATGTTTCGCAGATTGGCATCAGAGCAATTAAAGCCTTTGAATGGCCTTGATAAAGTGAGGAAATGGATTGAAGATCGAGGTTTGAAGCGGGCTGCAGTTACGAATGCTCCGAGACCAAATGCAGAACTCATGATCAAAATCCTTGgtctttcagatttttttgACGCTGTTATTATTGGAGGCGAATGTGAACATGCCAAGCCATATCCAGATCCCTACTTGAAAGCTCTTGAAGTGCTGAAAGCATCGAAAGATCACACTTTTGTATTTGAGGATTCAGTTTCAGGGATCAAAGCTGGAGTGGCAGCCGGAATGCCTGTGCTAGGTATAACTACCAGAAACCCGGAGCACTTACTGAGGGAGGCAAAGCCTGCTTTTCTAATCAAGGATTATGACGATCCAAAATTATGGGCAGCTTTGGAAGAACTTGACAAAGTTGGTGGTCCAAGAAATTG 743 0.428 MTASSENCVESKTSLAGLAPLEAVLFDIDGTLCDSDPLHYYAFREMLQEIGFNGGTPITEEFFIETVAGKHNDDIALALFPGDLQRGLKFVDDKEAMFRRLASEQLKPLNGLDKVRKWIEDRGLKRAAVTNAPRPNAELMIKILGLSDFFDAVIIGGECEHAKPYPDPYLKALEVLKASKDHTFVFEDSVSGIKAGVAAGMPVLGITTRNPEHLLREAKPAFLIKDYDDPKLWAALEELDKVGGPRN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01900 247 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 2 244 - -
Bva11g01900 247 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 21 229 - -
Bva11g01900 247 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 2 244 - -
Bva11g01900 247 Pfam Haloacid dehalogenase-like hydrolase 24 205 IPR041492 -
Bva11g01900 247 CDD HAD_BPGM-like 23 208 - -
Bva11g01900 247 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 21 229 - -
Bva11g01900 247 SUPERFAMILY HAD-like 19 239 IPR036412 -
Bva11g01900 247 Gene3D Putative phosphatase; domain 2 36 104 IPR023198 -
Bva11g01900 247 Gene3D - 22 229 IPR023214 -
Bva11g01900 247 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 21 32 IPR006439 -
Bva11g01900 247 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 119 132 IPR006439 -
Bva11g01900 247 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 150 166 IPR006439 -
Bva11g01900 247 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 96 205 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01900 Bva-Chr11 16408487 16411234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01900 - - gmx:100793483 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01900 11 16408487 16411234 Bva11g01900 11 16408487 16411234 ECH