Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01381 ATGCTCTATCTCCAAAGCCGTGATCAATTTGAAGTTTCAATATCTGATTCTAAGGTTCCATTGCGTGTTCCTCTGCACCAAAACTGGAAGCCATGGCTGAAAACCCTAGCTGACCAAAATCATCTGCGATATCCTTGCTCGGCGTCACCACATGATATCGAATCTGCGCTCTCATCCACTGGAATCCACCCTTCTCCTGAAATTATCCATGAAGTTCTAACTCTCTCATACAATTACCCTTTTTCTGCTCTGAAATTCTTTCGCTGGGCCGGGCGGTTGCAGAAGCACTCAGCATATGCGTGGAACTTGATGGTTGATCTGCTTGGTAAGAACCAGCTCTTTGAACCCATGTGGGGTGCAATTCGATCAATGAAGCAGGAAGGGGTACTTTCCATAGCCACATTCGTGTCAGTTTTCGGGAGTTACTATACAGCTGGTAGGTTTAACGAGGCTGTGATGAGCTTTGATCTGATGGATAGATATGGGATTCAGCCAGACGTTATTGCAGTAAATTCGCTATTAAGTGCAATTTGCCGTGAAGATAATCAAACTTCAAGGGCATTagaattatttgaaaagaTCAAAGGGAAGATACCTCCGGATGGTGACACATATGCCATTTTGTTGGAAGGGTGGGAGAAAGAAGGCAATCCAGCAAAAGCCAAAAGCACATTTGGTGAGATGGTGGTTCGTATTGGATGGAGTCCAAAAAATGTCTCAGCCTATGATGCCTTCTTGAGAACTCTCGTCAGTGAGCTGCAGATAGATGAGGCCATCAAGTTTCTGAAAGTCATGAAGGAACATAACTGCTTTCCAGGTTTGAAATTCTTTACCACTGCTCTTGATAATATGATCAAGCAAAATGATTCTGTTAATGCTATCCCCCTGTGGAATATAATGATGGGTAGTGGTGTTGTGCCCACCTTGGAAATGTACAATGCCATGATTAGCTTACTCTGCAACAACCAGATTGATCATGCATTTCAGCTGCTTGATCAGATGGTCTTCCAAGATGCTTTTCCTGACTTCTTAACggataatatgatttttgaatGTTTGGTGAAGAACAAAAAGGTTCGTGAAACTGGAAGGTTCTTCATTGAGATGATCAAGAATGAATGGCCGCCAACACATTCTAATTGTGTTGCCGCCATCACAATGTTGTATGATTGTGATGACCCTGAAGCAGCACATGAGATTTGGAGTTATATGCTTGAAAATCATGTCAAGCCATTAGATGAAAGTGCAAATGAATTGCTCATTGGTCTTTGTAACTTAGGTAGGTTATCAGAGTTGAGAAGGTGTGCTGAAGAAATGCTCGATAGAAAGATCAATATGTTTGTAGCTTGGCCCTTGGATGGAAGTGCCACATG 1373 0.4181 MLYLQSRDQFEVSISDSKVPLRVPLHQNWKPWLKTLADQNHLRYPCSASPHDIESALSSTGIHPSPEIIHEVLTLSYNYPFSALKFFRWAGRLQKHSAYAWNLMVDLLGKNQLFEPMWGAIRSMKQEGVLSIATFVSVFGSYYTAGRFNEAVMSFDLMDRYGIQPDVIAVNSLLSAICREDNQTSRALELFEKIKGKIPPDGDTYAILLEGWEKEGNPAKAKSTFGEMVVRIGWSPKNVSAYDAFLRTLVSELQIDEAIKFLKVMKEHNCFPGLKFFTTALDNMIKQNDSVNAIPLWNIMMGSGVVPTLEMYNAMISLLCNNQIDHAFQLLDQMVFQDAFPDFLTDNMIFECLVKNKKVRETGRFFIEMIKNEWPPTHSNCVAAITMLYDCDDPEAAHEIWSYMLENHVKPLDESANELLIGLCNLGRLSELRRCAEEMLDRKINMFVAWPLDGSAT 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01381 457 PANTHER OSJNBA0019D11.15 PROTEIN 48 446 - -
Bva11g01381 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Bva11g01381 457 Gene3D Tetratricopeptide repeat domain 184 322 IPR011990 GO:0005515
Bva11g01381 457 Gene3D Tetratricopeptide repeat domain 69 183 IPR011990 GO:0005515
Bva11g01381 457 Pfam PPR repeat 100 129 IPR002885 -
Bva11g01381 457 Pfam PPR repeat 311 335 IPR002885 -
Bva11g01381 457 Pfam PPR repeat 242 270 IPR002885 -
Bva11g01381 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Bva11g01381 457 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 48 446 - -
Bva11g01381 457 Gene3D Tetratricopeptide repeat domain 323 450 IPR011990 GO:0005515
Bva11g01381 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 236 IPR002885 -
Bva11g01381 457 Pfam Pentatricopeptide repeat domain 157 210 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01381 Bva-Chr11 13778866 13780351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01381 114 445 Glycosyltransferase AT1G05670 21.257 8.41e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01381 - - gmx:100796114 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01381 11 13778866 13780351 Bva11g01381 11 13778866 13780351 ECH