Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01297 ATGTCAGACTGGAGTACACTCTCCGGCGGCTCGGCCGgggagagaaagaaggaaggagAAGGAGTTAATAAGAAACAGCACACAGTTCCTCTGTTAAAGCTCTTCTCTTTCGCGGACTTTTATGATTATGTCTTAATGGCTATTGGATCTGTTGGGGCATGTGTTCATGGTGCTTCCGTTCCtgttttctttatcttctttgGAAAGTTGATAAATGTCATAGGCTTGGCTTACCTTTTCCCCAAAGAGGCTTCTCACAAAGTAGCCATGTACTCATTGGACTTTGTGTATCTCAGTATagcaatattattttcatcttggGCAGaGGTAGCTTGTTGGATGCATACTGGGGAACGTCAAGCAGCAAAGATGAGAATGGCTTATTTAAGGGCACTGCTGAATCAGGATATAAGCATTTTTGATACTGAGGCATCAACCGGAGAGGCTATTTCTGCTATTACCAGTGACATTATAGTTGTTCAAGATGCACTGTCTGAGAAGGTAGGGAACTTCATCCACTATCTGAGCCGGTTTTTAGCAGGTTTTGGTATTGGCTTCCTCAGAGTGTGGCAAATCAGTTTAGTAACTCTTTCAATTGTGCCATTGATTGCCATAGCTGGAGGCATTTACGCATACGTGACAATAGGCCTCATTGCAAAAGTTCGTAAAGCCTACGTGAGAGCAGGTGAAATCGCTGAAGAGGCCATAGGCAACGTTAGAACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTAAGATCATACCGAGAGGCTCTCatgaaaacttataaaaatggTCGGAAAGCTGGTTTAGCGAAGGGTCTGGGACTAGGCTCCGTGCATTGTGTCCTTTTTCTATCATGGTCCCTGCTTGTTTGGTTCACTAGCATTATTGTCCACAAGAACATCGCCAGTGGTGCCGAGTCTTTCACAACCATGCTTAATGTTGTTATTGCTGGCCTGTCACTTGGGCTGGGAGCGCCAGATGTCTCTGCATTTATCCGAGCTAAGGCAGCAGCATATCccatttttaagattatagAAAGGGATACAGTGAGCAAAGTCAGCTCAAAATCTGGTCGCAAATTAAGCAAGTTGGAGGGTCATATCCAATTTAAAGATGTCTGTTTCAGTTATCCATCTCGCCCTGATATAACTATTTTCAACAACTTTTCTCTTGACATTCCTTCTGGGAAAATTGTAGCCTTAGTGGGAGGGAGTGGATCTGGAAAGAGCACTGCGATATCATTGATCGAGCGCTTTTATGAACCTCTTTCTGGAAAAATACTATTAGATGAGAATGATATTAGGGAACTTGATCTTAAATGGCTTAGGCAACAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTTGCAACAAGCATCAAGGAAAACATACTGTATGGAAAAGATGATGCAACCATTGAAGAACTTAAACGTGCTGTGAAGCTTTCAGATGCTCAgtctttcataaataatcTTCCTGATAGATTAGAAACTCAGGTTGGTGAAAGAGGGATACAACTATCAGGTGGACAAAAGCAAAGGATTGCAATATCTCGTGCAATAGTGAGGAATCCATCAATCCTTTTACTAGATGAAGCTACCAGTGCTCTGGATGCCGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTCATGGTTGGTAGAACAACAATAGTAGTTGCTCACAGACTTTCTACAATTAGAAATGCAGATATGGTTGCTGTTGTTCAGGATGGGAGGATTGTTGAAACGGGCAGCCATCTGGAGCTCATTTCCAATCCAAATAGCGCATATGCATCTCTTGTTAAACTCCAAGAGACAGCTTCTTTGCAACACCAACCCACGACAGGTCCTGACTTAGGGCGGCCACCAAGCATGCGGTATTCTAGAGAGTTATCCCATAGAACAGCAAGCTTTGGCGGAAGTTTTCGATCAGATAAAGAATCTGTTGGTCGTGTTTGTGCTGATGAGGTGGAAATAGTTGGCAAGTCAAGTGATGTTTCAGTAACAAGACTATATTCTATGGCTCGGCCAGACTGGCTTTATGGGTTATGTGGCACCTTTTGTGCATTTATTACTGGAGCACAAATGCCGCTATTTGCCCTTGGAATCTCTCATGCTCTTGTATCTTATTACATGGACTGGGATACAACACGTCGTGAAgtaaaaagaattgttttCCTCTTCTGTGGGGCAGCTGTGTTGACTGTCGTTGCGCACGCCATTGAGCATCTTTGTTTTGGAATCATGGGTGAACGACTTACTCTTCGTGTGCGAGAAATGATGATTTCTGCTATACTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCGTTTAGAGAGTGATGCGACTTTATTACGAACTGTAGTTGTTGATCGGTCTTCAATTCTCTTACAGAATGTTGGTATGGTTGTTGCTTCATTCGTGATTGCCTTCATGTTGAACTGGAGGTTAGCACTTGTTGTCATAGCCACATATCCTCTGGTTATTAGCGGCCACATCAGTGAGAAACTTTTCATGCAAGGCTTTGGCGGCAACTTGAGCAAAGCATATCTAAAAGCCAATATGATAGCTGGGGAGGCTGTGAGTAACATACGCACTGTTGCCGCATTCTGTTCTGAAGAAAAGATCATTGAACTTTATGCTAATGAGCTTGTTGAGCCTTCCAGGCGTTCATTTTTAAGGGGCCAAATTGCAGGCATCTTCTATGGCATTTCTcagttcttcattttctcttcatatGGCCTTGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTTGCCAGCTTTAAATCAATCATGAAGTCATTTATGGTTTTGATTGTAACAGCACTGTCCATGGGAGAGCTTTTGGCACTGGCGCCAGACCTTTTGAAAGGGAATCAAATAGTTGCATCAGTTTTTGATGTGATGGATAGGAAGTCGTTAGTTACAAGTGATTCAGGAGAAGAACTAAAGAGAGTGGAGGGAACTATCGATCTAAAAAGTATCCATTTCAGCTACCCTTCAAGGCCAGATGTGTTGATTTTCGAAGATTTTAATCTAAGAGTGCCCTCAGGCAAGAGTATTGCCTTAGTGGGCCAAAGTGGTTCTGGTAAAAGCTCTGTTATTGCCCTTATACTCAGATTTTATGACCCAACATCAGGGAGGGTGATGATTGATGGAAAAGACATCAGGAGACTTAATCTGAAATCTCTGAGGAAACATATTGGTCTTGTGCAACAAGAGCCTGCTCTTTTTGCAACATCAATTTATGAAAACATTCTTTATGGAAAGGAAGGAGCTTCTGAGTCAGAAGTGATTGACGCAGCTAAGCTTGCCAATGCTGATAGTTTTGTCAGTTCTCTTCCTGACGGCTATGCCACCAAAGTGGGTGAACGAGGTGTTCAACTCTCTGGTGGCCAGAGACAAAGGGTAGCCATTGCCAGAGCTGTGTTGAAAAACCCGGAAATCTTGCTGCTAGATGAAGCAACTAGCGCGCTGGACGTTGAGTCAGAGCGCATGGTACAGCAAGCACTGGATAGATTGATGAAAAACAGAACAACAGTTATTGTGGCACATAGGCTCTCCACAATAAGGAATGCAGATCAAATCTCAGTTTTACAAGAGGGGAAGATAGTTGAGCAAGGGACTCATTCAGCTCTTTTAGAGAACAAAAATGGAGCATACTTTAAATTACTCAACCTTCAACATCAGCAGCAGCAATA 3749 0.4161 MSDWSTLSGGSAGERKKEGEGVNKKQHTVPLLKLFSFADFYDYVLMAIGSVGACVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAMYSLDFVYLSIAILFSSWAEVACWMHTGERQAAKMRMAYLRALLNQDISIFDTEASTGEAISAITSDIIVVQDALSEKVGNFIHYLSRFLAGFGIGFLRVWQISLVTLSIVPLIAIAGGIYAYVTIGLIAKVRKAYVRAGEIAEEAIGNVRTVQAFAGEERAVRSYREALMKTYKNGRKAGLAKGLGLGSVHCVLFLSWSLLVWFTSIIVHKNIASGAESFTTMLNVVIAGLSLGLGAPDVSAFIRAKAAAYPIFKIIERDTVSKVSSKSGRKLSKLEGHIQFKDVCFSYPSRPDITIFNNFSLDIPSGKIVALVGGSGSGKSTAISLIERFYEPLSGKILLDENDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATIEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVRNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADMVAVVQDGRIVETGSHLELISNPNSAYASLVKLQETASLQHQPTTGPDLGRPPSMRYSRELSHRTASFGGSFRSDKESVGRVCADEVEIVGKSSDVSVTRLYSMARPDWLYGLCGTFCAFITGAQMPLFALGISHALVSYYMDWDTTRREVKRIVFLFCGAAVLTVVAHAIEHLCFGIMGERLTLRVREMMISAILKNEIGWFDDTNNTSSMLSSRLESDATLLRTVVVDRSSILLQNVGMVVASFVIAFMLNWRLALVVIATYPLVISGHISEKLFMQGFGGNLSKAYLKANMIAGEAVSNIRTVAAFCSEEKIIELYANELVEPSRRSFLRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKSFMVLIVTALSMGELLALAPDLLKGNQIVASVFDVMDRKSLVTSDSGEELKRVEGTIDLKSIHFSYPSRPDVLIFEDFNLRVPSGKSIALVGQSGSGKSSVIALILRFYDPTSGRVMIDGKDIRRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASESEVIDAAKLANADSFVSSLPDGYATKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERMVQQALDRLMKNRTTVIVAHRLSTIRNADQISVLQEGKIVEQGTHSALLENKNGAYFKLLNLQHQQQQ 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01297 1249 SUPERFAMILY ABC transporter transmembrane region 674 987 IPR036640 GO:0005524|GO:0016021
Bva11g01297 1249 Pfam ABC transporter transmembrane region 48 318 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva11g01297 1249 Pfam ABC transporter transmembrane region 688 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva11g01297 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Bva11g01297 1249 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Bva11g01297 1249 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 22 1246 - -
Bva11g01297 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Bva11g01297 1249 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524
Bva11g01297 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva11g01297 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1246 IPR039421 -
Bva11g01297 1249 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
Bva11g01297 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Bva11g01297 1249 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Bva11g01297 1249 SMART AAA_5 397 583 IPR003593 -
Bva11g01297 1249 SMART AAA_5 1033 1225 IPR003593 -
Bva11g01297 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Bva11g01297 1249 CDD ABC_MTABC3_MDL1_MDL2 1006 1239 - -
Bva11g01297 1249 Gene3D ABC transporter type 1, transmembrane domain 94 982 IPR036640 GO:0005524|GO:0016021
Bva11g01297 1249 Gene3D - 368 634 IPR027417 -
Bva11g01297 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1244 IPR027417 -
Bva11g01297 1249 SUPERFAMILY ABC transporter transmembrane region 34 340 IPR036640 GO:0005524|GO:0016021
Bva11g01297 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 989 - -
Bva11g01297 1249 Gene3D - 996 1249 IPR027417 -
Bva11g01297 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva11g01297 1249 MobiDBLite consensus disorder prediction 1 22 - -
Bva11g01297 1249 Pfam ABC transporter 389 537 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01297 Bva-Chr11 13353317 13360936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01297 29 1244 Calmodulin-binding Proteins AT2G36910 50.363 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01297 K05658 - gmx:100819045 2094.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01297 11 13353317 13360936 Bva11g01297 11 13353317 13360936 ECH