Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01292 atggggaaaaaaaaacgtaAGGAACCACAGGAAACACCCGAAAGCAACGGGATTTTGGATTCCTCCTCCGGTATCTTTAACACCTTGTTCGGTGAGGTACCGGAACAGCACACCTCCGGTTCTCTATTTTCCGATAAAAACCCCTTTCGAAGGAAGCCTCAAGAATCTGGTTCATGTCCGGGCTCAGCTAAGGATACTGAAATCCCTGATAATGGCGGCGCCGGGGACCACGATTCTGGTGAGCTGacgaagaggaagaggaaaaaagagaaaaactccACTGTTGATTCGGGTTCCGCCTTTGAAGCTTCGGAGAAGAAGCTAAAACTTGGTTCCGATGTAGGCATTCATCAGGGTCCTCAACCAGATAGGAATACAGAGGATAGCCAGGCCAAAAACACTAATTTGGGAGCGCAGGGGTTTGCGTTGtcgaagaaaaagaagggtaAAGAACGAGAAATGACTTTGCAGTCAAATAACGTGCCAAATATTGGTGAGGGGGAAGACCCCGATTCTGGTTTGCgatcaaaggaaaaatatgatCTTGTGAATGAGGACAAggagaatatgaaaaagaagagaaagagggatGAACTTGAGGAGGACTATGAGGCAAGGAAGTATGGAGCAGTTGAAGAAAAGGATGATGGAGGTGAAGGCTTAGGAAACAAGACCGTTGGAAGCAAGAGGAAGACTGTGGATAATCCAGCTGACATGCTGGTTTCCAATGAAGGTTTTGATGATGAGAGTAAGCTTTTGAGAACTATTTTTGTTGGGAATTTGCCCCTTAAGACCAAGAAGAAGAGTTTGTTGAAGGAGTTTAAGAAATTTGGAGAGGTAGAATCTGTGAGGATTCGTTCTGTGCCAATATTGGATACCAAAAGGCCTAGAAAAGGAGCTATTCTATCTAAGAAAATCAATGATTCTGCTGCTGATAGCGTTCATgcatatattgtttttaaatcAGAGGAATCTGTGGAGGCTTCTTTGTCCCATAACATGGCAGTGGTTGGAGGAAATCACATTCGTGTTGATAGGGCATGCCCCCCCCGCAAAAAACTTAAAGGGGAGAGTGCTCCACTCTATGATAACAAGAGAACTGTATTTGTGGGCAACCTCCCATTTGATGTAAAAGATGAAGAAGTATATCGATTATTTTCTGGTATGGCAAACCTGGAATCCAGTATAGAAGCTGTTAGAGTCGTTAGAGATCCTCATATTAATCTTGGAAAGGGCATTGCATATGTGCTGTTCAAAACCAAGGAAGCTGCTAATTCTGTTGTCAAGAAACGGAGCTTGAAGCTCCGAGACCGAGAACTGAGATTATCTCTTGCCCGATCAGATGCCACGCCATCTAAAAGACCAAACTCATCACCAGCGCAAGGTCCTAATACCCCTGCGAAGAAGTTGGCTACGTCTTCAAGCAGCAATAACAAGACAAACAGCAAAACCAACATGTCATACCAGGGTGTGGTGGCTTCAAAGTCTCCTTCCAGCAGTAATAAGAGCGGAAAGAGGAAAGCAAATATGTCTTACCAGGGTTTACGTGCAGGTGCTCACAAGAGCAGCCTTAACACACAGAGCGGAGGGCAACCAACAGAGCGCAGGAAGAAAAGACCAGCAGTTGCTGCTAAAAAGGCCAAGGCAAAATCGCTCAAGGATGGTGTTCCATCAAAACAAGCGGGGATCAAACGCAAGCTTGATGGTCGGACTCCAGATAACTcccagcaaaaaaaaaaggttaaaaagaATGGGTA 1757 0.4149 MGKKKRKEPQETPESNGILDSSSGIFNTLFGEVPEQHTSGSLFSDKNPFRRKPQESGSCPGSAKDTEIPDNGGAGDHDSGELTKRKRKKEKNSTVDSGSAFEASEKKLKLGSDVGIHQGPQPDRNTEDSQAKNTNLGAQGFALSKKKKGKEREMTLQSNNVPNIGEGEDPDSGLRSKEKYDLVNEDKENMKKKRKRDELEEDYEARKYGAVEEKDDGGEGLGNKTVGSKRKTVDNPADMLVSNEGFDDESKLLRTIFVGNLPLKTKKKSLLKEFKKFGEVESVRIRSVPILDTKRPRKGAILSKKINDSAADSVHAYIVFKSEESVEASLSHNMAVVGGNHIRVDRACPPRKKLKGESAPLYDNKRTVFVGNLPFDVKDEEVYRLFSGMANLESSIEAVRVVRDPHINLGKGIAYVLFKTKEAANSVVKKRSLKLRDRELRLSLARSDATPSKRPNSSPAQGPNTPAKKLATSSSSNNKTNSKTNMSYQGVVASKSPSSSNKSGKRKANMSYQGLRAGAHKSSLNTQSGGQPTERRKKRPAVAAKKAKAKSLKDGVPSKQAGIKRKLDGRTPDNSQQKKKVKKNG 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01292 585 CDD RRM1_RBM34 254 345 IPR034220 -
Bva11g01292 585 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 181 583 - -
Bva11g01292 585 MobiDBLite consensus disorder prediction 443 585 - -
Bva11g01292 585 MobiDBLite consensus disorder prediction 516 531 - -
Bva11g01292 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 298 IPR000504 GO:0003723
Bva11g01292 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 440 IPR000504 GO:0003723
Bva11g01292 585 Gene3D - 357 455 IPR012677 -
Bva11g01292 585 MobiDBLite consensus disorder prediction 122 140 - -
Bva11g01292 585 MobiDBLite consensus disorder prediction 70 95 - -
Bva11g01292 585 SUPERFAMILY RNA-binding domain, RBD 248 355 IPR035979 GO:0003676
Bva11g01292 585 SMART rrm1_1 255 345 IPR000504 GO:0003723
Bva11g01292 585 SMART rrm1_1 367 443 IPR000504 GO:0003723
Bva11g01292 585 PANTHER RNA-BINDING PROTEIN 34 181 583 - -
Bva11g01292 585 MobiDBLite consensus disorder prediction 14 45 - -
Bva11g01292 585 CDD RRM2_RBM34 367 443 IPR034221 -
Bva11g01292 585 MobiDBLite consensus disorder prediction 1 201 - -
Bva11g01292 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 447 IPR000504 GO:0003723
Bva11g01292 585 MobiDBLite consensus disorder prediction 170 201 - -
Bva11g01292 585 MobiDBLite consensus disorder prediction 547 585 - -
Bva11g01292 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 349 IPR000504 GO:0003723
Bva11g01292 585 Gene3D - 251 354 IPR012677 -
Bva11g01292 585 SUPERFAMILY RNA-binding domain, RBD 362 463 IPR035979 GO:0003676
Bva11g01292 585 Coils Coil 180 202 - -
Bva11g01292 585 MobiDBLite consensus disorder prediction 449 508 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01292 K14837 - gmx:100784494 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01292 11 13333588 13337114 Bva11g01292 11 13333588 13337114 ECH