Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01275 ATGGTTTCTCAACCTCCCATGGAAATCCACCGACCTCAACTCCTGCAATCCTTGTCCTCAGATTCAGTTCTTGCGCAGAAATCCTTTGATGATGCACATCTAGTTCCTGTTTCTGAGGAAACCTGTAATGCGTCGTCACATCGTCCTCACTTCGAAACCCTAGATGGCGCTTCTTTGGTTCCGACTTATCAGATGGATTCTTCACACACTTTACCCATGGAAGACCAAGATGACGGCagtttttctccttctccgaCTAAGATGGATGTCTCTCATCCCAATTTACTTCCCAAAACCCTAGATGGCTATCATTCGGTCTCCCAATTTACATCTGCATCAGAAGAAATTCCAGATAATGATGATTCTCTTTGCCCTTCGGTGCCTCGGTCCTCTACTCCAGATGGACATTCAACGCCTAACCCAGCAACGACTAAGGATAATTATTCCCCTCTACTGTGTGATTCCAGTAGAGGAGACAATACAGAGCAATCTTCTCAGTACATGTTAAATGATATATCAGATCATTCGTCATCTTCCAAAAAGTGGCGCTCGTGGCCTTCATCTTCGTCGGGACATTTTAAAGAAGAATGGGAGTCGGGGTTCACTCATGAAGCAACTTTGCTGCCTTCTGAAGACACCGAAGTACCCTCGACAAATACGTTTTCTGCCTCCACAATCGTGCCTTCTATGGTGGGGGCCGGGCTCGCAAATCTTGGTAACACATGCTTTATCAATGCGATACTGCAATGCTTTACTCATACAGTGCCACTAATCCAGGGTCTTCTTTCTTGCAGTCATTCTGCCCCTTGTGATTATGAGATTGATGGGTTCTGTGTCATTTGTGGTCTACGTGAACACATTGAACGGTCATTAGCAACCTCAGGAAGAATTCTTTCTCCTTGGAAACTTGTTAACAATTTGAACCATTTTTCATCTTGTTTTAGAAGGTATCAGCAAGAGGATGCCCATGAATTTATGCAGTGCGTCTTAGATAAATTGGACAGATGTTTTGtagatttgaagaaaaaaaaccaGAGTTGTCAACAAGATGACAATCTAGTAGAGAAAGTATTTGGAGGTCGTCTGATTAGCAAACTTCAATGTTCCAACTGTGGCCACTGTTCTGACACATACGAGCCTCTGATTGACCTTAGTTTAGGAATTCAAAATGTGGATAACCTTCCAAGTGCTCTGGAATATTTCACTAAGGTGGAGACAATTGATGCAAAGTTTAGATGTGATGGCTGCAAGGGAGAAGTATCCATGGAGAAGCAGCTCTTGTTGGATCAGGTGCCTTCAGTTGCAGCTTTGCACTTGAAGAGATTTGAGACAGATGGGGCCTTTGTTGAAAAGATTGATAAGCATGTTGATTTCCCACTGGAGTTGGACTGGCAGCCTTACACCAGTTGTAGTCGGGACAATAATGttgtattaaaatatgatCTGTATGCAATTGTTGTGCATACTGGATTTTCATCAACTTCTGGGCATTACTTTTGCTTTGTTCGCTCTGCTCCTGACATGTGGTTTAGATTGGATGACTCAAAGGTTACCTGGGTCCAAGGAGATTATGTGTTGTCTCAGGAGGcctacatattattttatgcaaaaCAAGGTACACCATGGTTTTCAAGTATTGTAGAAGCTTTACTACCTTGCTTGGATCCCAGCAATTTGAGTACGTCTCCTAAGTCAGTTTTAGACAACCTTGACAGTGTGTCTAATTCACATCCTAGTATAATAAACATTGTAAGTGGTAGTGGTACCAAAGAATTTTCTGGGGGGTTCTCTGATTATTCTTCTGGAGGAAGACCTGAGGTACTTGAGGTGAATGATATATTAGATGCTTCTCATGGCCCTGGACAGATTCCTTCCGGATTAAATTTGGAAAGTGCTGGTTCTAATGGCTCTAGAGATGATACCACCCATACTCAAGTGGCACGTCTGAGTAATGTCATCCCTAATAGAAATTCACATTATGAGAGAAACAGCACTCCTTCCTCTCCCGATCAAAACAATTGTCTCCAGGAGGTTGTAAATattagagagaaagagaatgatGGTTTCCGTTCTTTAACTCCTCCCAGCTCCCCTAGTCCAGGTGCATATTCTCCAGATATGAATTACCACATCCCACGCGATCATTTGAAGATGGAGAATCATGAGAGCTCTAAGAGACCCTTAAATAAGTCTCTGGAGGattgcaagagaaaagaagctaTAAAATATGTTACCAAGAGTATGCCTGGTTCTAGGAGGAGGAAACTTTTGGATGCGATGATGGGGCCCCATAGTGAGGGTCCtgtaaataagagaaaaagaagagtggATTCATCAGTGTGTAAGAAAGGCAGCCCTCCTAGGGTTGGAAGAAAATCAAACCATGGTTCTGTCATGCATCGCCCTGTCGTTGCTTG 2417 0.4104 MVSQPPMEIHRPQLLQSLSSDSVLAQKSFDDAHLVPVSEETCNASSHRPHFETLDGASLVPTYQMDSSHTLPMEDQDDGSFSPSPTKMDVSHPNLLPKTLDGYHSVSQFTSASEEIPDNDDSLCPSVPRSSTPDGHSTPNPATTKDNYSPLLCDSSRGDNTEQSSQYMLNDISDHSSSSKKWRSWPSSSSGHFKEEWESGFTHEATLLPSEDTEVPSTNTFSASTIVPSMVGAGLANLGNTCFINAILQCFTHTVPLIQGLLSCSHSAPCDYEIDGFCVICGLREHIERSLATSGRILSPWKLVNNLNHFSSCFRRYQQEDAHEFMQCVLDKLDRCFVDLKKKNQSCQQDDNLVEKVFGGRLISKLQCSNCGHCSDTYEPLIDLSLGIQNVDNLPSALEYFTKVETIDAKFRCDGCKGEVSMEKQLLLDQVPSVAALHLKRFETDGAFVEKIDKHVDFPLELDWQPYTSCSRDNNVVLKYDLYAIVVHTGFSSTSGHYFCFVRSAPDMWFRLDDSKVTWVQGDYVLSQEAYILFYAKQGTPWFSSIVEALLPCLDPSNLSTSPKSVLDNLDSVSNSHPSIINIVSGSGTKEFSGGFSDYSSGGRPEVLEVNDILDASHGPGQIPSGLNLESAGSNGSRDDTTHTQVARLSNVIPNRNSHYERNSTPSSPDQNNCLQEVVNIREKENDGFRSLTPPSSPSPGAYSPDMNYHIPRDHLKMENHESSKRPLNKSLEDCKRKEAIKYVTKSMPGSRRRKLLDAMMGPHSEGPVNKRKRRVDSSVCKKGSPPRVGRKSNHGSVMHRPVVA 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01275 805 MobiDBLite consensus disorder prediction 68 89 - -
Bva11g01275 805 MobiDBLite consensus disorder prediction 615 673 - -
Bva11g01275 805 MobiDBLite consensus disorder prediction 68 96 - -
Bva11g01275 805 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 174 780 - -
Bva11g01275 805 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 174 780 - -
Bva11g01275 805 MobiDBLite consensus disorder prediction 124 163 - -
Bva11g01275 805 Gene3D Cysteine proteinases 232 539 - -
Bva11g01275 805 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843|GO:0006511
Bva11g01275 805 SUPERFAMILY Cysteine proteinases 233 537 IPR038765 -
Bva11g01275 805 MobiDBLite consensus disorder prediction 767 781 - -
Bva11g01275 805 MobiDBLite consensus disorder prediction 759 805 - -
Bva11g01275 805 MobiDBLite consensus disorder prediction 110 163 - -
Bva11g01275 805 Pfam Ubiquitin carboxyl-terminal hydrolase 234 535 IPR001394 GO:0004843|GO:0016579
Bva11g01275 805 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 480 498 IPR018200 GO:0004843|GO:0006511
Bva11g01275 805 MobiDBLite consensus disorder prediction 627 673 - -
Bva11g01275 805 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 538 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01275 Bva-Chr11 13260233 13264225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01275 228 537 Miscellaneous Gene Families AT4G31670 34.483 5.85e-52 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01275 K11855 - qsu:112012452 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01275 11 13260233 13264225 Bva11g01275 11 13260233 13264225 ECH