Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01153 ATGCATAATTTTACCGCAAAGGTCTCATGGAGCATGCAAAAGGCTGAAGTGTTATCCTTCATCCGAGCAGCAGTAACTTCCAGAGCTTCGTGTTATACACCGATAGCTACAAGTAATGCTAGTAACTTTGTATATTTGAAGAACCGCGAAATTGATACCTTGATAAAATCTGGGAATCTAAATAATGCGGTTACGGTGTTTAATAATATGTCGTTACGTGATGTTGTCACCTACAACTTGCTAATATCTGGGCATCGCCGATTTGGGCTATCGGAGCAGGCTCTTCATCTCTATAGTGAAATGCGTCTAAAGGGTATAAGAGAAAGTGCGTCGACGTTCTCTTCTATTATTGGAATTTGTAGCGATGCTGGGTTCCACAGAGGAGGAGTTCAGTTGCATTGCAGGGTGGTTAAGCTTGGATTTAGTTTGAATGTGTTCCTTGGAGGTGCCCTCATTGATCTTTACATGCACATGGGACATCCTGAGATGGCACTTAAATTGTTTGATGAGTTGCCAGAACGAAATTTGGCTATATGGAATGTGATATTGCGTGGGTTATCTGAACTGGGCCAATTGGAAGAATTGCTTAGATTTCAGTCTCAGATGGAATCGGAAGGCGTAAAGCCAAATGGTCTCACATTTTGTTATTTACTTAGGGGGTTTAGTAATGAGAGGTCGCTATATGAAGGGAAGAAGCTTCAGTCCCGCATTGTTAAGCTCGGAATGGGGGAATCAAACATTTATGTTGCTAATGCTTTGGTAGATTTTTACTCTGCATGTGGGTGCATGGTATCAGCCAGGAAATCATTTGAAGTCATACCAATTGAGGATGTTATTTCTTGGAACTCATTGATTTCTGTTTACACAGACAACAATATGTTGTCAGATGCTCTGGAATTATTTACAACTATGCAACTATGGGAACAGAGGCCATCTATTCGTTCATTAGTGAGTTTTCTGAAGTTGTCCAGTAGAATCCAAAATATCACTTTGGGGAAGCAGATTCACTGCTGCGTTTTAAAATTGGGTTTTGATAAAGTAAGTGTACACGTTCAATCTGCTTTGATAAACATGTATGGAAAAAGCAGTGAAATTGAGAGTTCCATTGCTGTATTTGAATGCCTTCCAGAGAACACTTTGGAGTGTTGCAACTCGTTGATGACCTCTTTGTCCCATTGTGCTGCCTTCGAAGATGTTGTGGAGCTGTTATATTTAATGCTTGATGAAGGTATCAGACCAGATGGGGTAACCTTCTCAACCTCACTAAAAGCATTGTCTGTATCAGCTTCGGCAAGCTTCACGAACTTCAGTTTACTGCACTGTTTTGCATTAAAATCAGGATTTGAAGCCGATATTGCCGTTTCTTGTTCCCTAATTGATGCATATTCAAAATGTGGGCATGTTGAACTCTCTCGTCAGATTTTCGAGGGCCTTCATTCTCCTAATGCTGTCTGTTTCACATCAATGATCAACGGTTATGCCCGGAATGGAATGGGAAGAGAAGTTCTAGAAACGCTACAAGCCATGATTGAGAAAGGTCTAAAATCAGATAAAGTGACCTTCTTGTGCGCATTAACAGGGTGCAACCATGCAGGATTGGTCGAAGAAGGAAAAGTAATCTTTGAATCGATGAAATCTCTTCACGGGGTCCACCCAGATCGCCAGCATTTTTCATGCATGGTGGATCTTTTATGCCGTGCAGGACTACTGAAAGAAGCTGAAGAGTTACTGCTACAGGCAACTGGGAAGGGAGACTGTAATATGTGGAGCTCATTGATGAGAAGTTGCAGGATACACAAGGATGAAGTTGTTGGAAGAAGAGTGGCAGAAATTGTAATGGAACTAGAGCCAGACGATCCTACGTTGTGGTTGCaagtttcaaatttctattctgAGATTGGGGAGTTTGATACTGCTATGCATATCAGGGAGGTAGCTCTAGCAAGGAAGATGAGAAGGGTGATTGGTCATAGTTTAGTTGAGATAAAATGTTG 1994 0.4107 MHNFTAKVSWSMQKAEVLSFIRAAVTSRASCYTPIATSNASNFVYLKNREIDTLIKSGNLNNAVTVFNNMSLRDVVTYNLLISGHRRFGLSEQALHLYSEMRLKGIRESASTFSSIIGICSDAGFHRGGVQLHCRVVKLGFSLNVFLGGALIDLYMHMGHPEMALKLFDELPERNLAIWNVILRGLSELGQLEELLRFQSQMESEGVKPNGLTFCYLLRGFSNERSLYEGKKLQSRIVKLGMGESNIYVANALVDFYSACGCMVSARKSFEVIPIEDVISWNSLISVYTDNNMLSDALELFTTMQLWEQRPSIRSLVSFLKLSSRIQNITLGKQIHCCVLKLGFDKVSVHVQSALINMYGKSSEIESSIAVFECLPENTLECCNSLMTSLSHCAAFEDVVELLYLMLDEGIRPDGVTFSTSLKALSVSASASFTNFSLLHCFALKSGFEADIAVSCSLIDAYSKCGHVELSRQIFEGLHSPNAVCFTSMINGYARNGMGREVLETLQAMIEKGLKSDKVTFLCALTGCNHAGLVEEGKVIFESMKSLHGVHPDRQHFSCMVDLLCRAGLLKEAEELLLQATGKGDCNMWSSLMRSCRIHKDEVVGRRVAEIVMELEPDDPTLWLQVSNFYSEIGEFDTAMHIREVALARKMRRVIGHSLVEIKC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01153 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Bva11g01153 664 PANTHER OS01G0913400 PROTEIN-RELATED 19 659 - -
Bva11g01153 664 PANTHER - 19 659 - -
Bva11g01153 664 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Bva11g01153 664 TIGRFAM PPR: pentatricopeptide repeat domain 178 210 IPR002885 -
Bva11g01153 664 TIGRFAM PPR: pentatricopeptide repeat domain 76 106 IPR002885 -
Bva11g01153 664 TIGRFAM PPR: pentatricopeptide repeat domain 279 306 IPR002885 -
Bva11g01153 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Bva11g01153 664 SUPERFAMILY TPR-like 559 649 IPR011990 GO:0005515
Bva11g01153 664 Pfam PPR repeat family 73 120 IPR002885 -
Bva11g01153 664 Pfam PPR repeat family 481 528 IPR002885 -
Bva11g01153 664 Pfam PPR repeat family 175 222 IPR002885 -
Bva11g01153 664 Gene3D Tetratricopeptide repeat domain 433 660 IPR011990 GO:0005515
Bva11g01153 664 Gene3D Tetratricopeptide repeat domain 126 244 IPR011990 GO:0005515
Bva11g01153 664 Gene3D Tetratricopeptide repeat domain 339 432 IPR011990 GO:0005515
Bva11g01153 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Bva11g01153 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Bva11g01153 664 Pfam PPR repeat 549 577 IPR002885 -
Bva11g01153 664 Pfam PPR repeat 457 476 IPR002885 -
Bva11g01153 664 Pfam PPR repeat 279 305 IPR002885 -
Bva11g01153 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Bva11g01153 664 Gene3D Tetratricopeptide repeat domain 44 125 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01153 Bva-Chr11 12603838 12605832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01153 46 662 Glycoside Hydrolase AT3G49170 29.346 3.84e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01153 - - lja:Lj0g3v0314629.1 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01153 11 12603838 12605832 Bva11g01153 11 12603838 12605832 ECH