Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01152 atggacAAATTCTACTTGGTTCCCTTACTTGGTTTGCTGATAGCGACTCATGTAGTTGCAGGACACATGGTATGCAACAACATTGGCATACCTGAAGAACTTGAAAGCctggaaatagaagaaaacgaGGTAGAACTTTCTGAGATTCCTTCATGGAAAAGTCAGCGGGGTGGAAAGGTTCTTGTGAATGTAGATAGTTTTTCTGCAGTTGGAGATGGAGTATCTGATGATACCCAGGCTTTTCAAAAAGCATGGGACGTTGCTTGCTCTACACCAAaatctgttttctttgttCCCCAAGGACGCAGTTATCTAGTCAGTGCTACAAAATTTAAAGGGCCTTGTGCAGACAAGCTAACCATCCAGATTGATGGAACAATAGTAGCACCAGATGAGCCCAAGAATTGGGATCCAAAATTCGAACGGGTTTGGCTTGAGTTTTCTAAATTGGATAAAGCTGTTTTCCAAGGTGATGGAGTTATTGATGGTTCAGGCAGCAAATGGTGGGCTGAATCTTGCAAAAAGAACAAGTCGAatCCTTGCAGAGGAGCTCCAACAGCATTAACCATAGATTTAAGCACAGCTATAAGGGTAAAAGGGCTAACTATCCAGAATAGTCAACAGATGCATTTCGTCATTTCTCGGTGTGAAGCGGTTCGAATTAATGGTGTGAAAGTGTCAGCGCCAGGAGACAGCCCAAACACTGATGGAATCCATATAAGTGAATCAACAAATGTTGTAATCCAAGATACCAAAATTGGAACAGGTGATGATTGCATATCAATTGTCAATGCTAGCTCTATTATCAAAATGAACAGAATTTATTGTGGACCTGGACATGGAATCAGCATTGGAAGCCTTGGGAAGGACAACTCTACTGGCATAGTCACAAAGGTGATTCTGGATACGGCAGTTCTTAAGGAAACTACTAATGGTGTCAGGATTAAGACCTGGCAGGGAGGTTCTGGTTATGTCCGTGGGGTTCGCTTTCAGAATGTGAAGATGGACGATGTATCAAACCCCATTATTATAGATCAGTTCTACTGTGATTCTCCTACCAGTTGTCAAAACCAGACATCTGCTGTGAAAGTAAGCGAGATCATATACCGGAACATTAGTGGCACTACAAAGAGTGCAAAGGCCATAAAATTTGACTGCAGTGACAGTGTTCCCTGCAGCAACTTAGTCCTTAGCAATGTGGACTTGGAGAAACAGGATGGTACAGTGGAGGCATATTGCCACTCTGCTCGAGGTTTTGGCGAAGGAGTAGTTCATCCTGCTGCCGATTGCCTTACTTCCAGTGACAAAAGTGATGAACTTGCAGAATCAATTGCGGAGGATATTCGGCACACTGAACTATG 1361 0.4188 MDKFYLVPLLGLLIATHVVAGHMVCNNIGIPEELESLEIEENEVELSEIPSWKSQRGGKVLVNVDSFSAVGDGVSDDTQAFQKAWDVACSTPKSVFFVPQGRSYLVSATKFKGPCADKLTIQIDGTIVAPDEPKNWDPKFERVWLEFSKLDKAVFQGDGVIDGSGSKWWAESCKKNKSNPCRGAPTALTIDLSTAIRVKGLTIQNSQQMHFVISRCEAVRINGVKVSAPGDSPNTDGIHISESTNVVIQDTKIGTGDDCISIVNASSIIKMNRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLKETTNGVRIKTWQGGSGYVRGVRFQNVKMDDVSNPIIIDQFYCDSPTSCQNQTSAVKVSEIIYRNISGTTKSAKAIKFDCSDSVPCSNLVLSNVDLEKQDGTVEAYCHSARGFGEGVVHPAADCLTSSDKSDELAESIAEDIRHTEL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01152 453 Pfam Glycosyl hydrolases family 28 93 413 IPR000743 GO:0004650|GO:0005975
Bva11g01152 453 Gene3D - 50 451 IPR012334 -
Bva11g01152 453 PANTHER BNAA08G20470D PROTEIN 2 440 - -
Bva11g01152 453 ProSitePatterns Polygalacturonase active site. 273 286 IPR000743 GO:0004650|GO:0005975
Bva11g01152 453 SUPERFAMILY Pectin lyase-like 60 431 IPR011050 -
Bva11g01152 453 PANTHER - 2 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01152 Bva-Chr11 12600168 12603199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01152 23 453 Glycoside Hydrolase AT1G23460 69.266 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01152 - - gmx:100804067 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01152 11 12600168 12603199 Bva11g01152 11 12600168 12603199 ECH