Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01125 ATGTCCGCAGAGAGCACCGTTGGGTCCACCGATTTACCCGTGAAGAGGCAGAGGGAAGATGGAGAAAACGGAGTCTCTATGGAGACCGAGGGTGTTAAGGAGCCTGATTGTATATCCGCTGTGATTCCTGGGTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCACACTCCCTGAAGGTGGAGAAAATCTTATTTCAAGGGAAGTCTGACTACCAAGATGTCATGGTCTTCCAGTCATCAACATACGGCAAGGTTCTTGTTTTGGATGGAGTGATTCAGCTCACTGAAAGAGATGAGTGTGCCTATCAAGAAATGATCACACATCTTCCACTTTGCTCGATTCCAAATCCCAAAaagGTCTTGGTTATCGGTGGAGGGGATGGTGGGGTCCTCCGAGAAGTATCTCGTCATTCTTCTGTTGAGAAGATAGAAATCTGTGAAATTGACAAGATGGTAGTTGATGTCTCCAAACAATTTTTCCCTGATATTGCAGTAGGGTATGAGGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTTCTGAAGGCAGTCCCTGAAGGAACTTACGATGCCGTTATAGTGGACTCATCTGACCCTATAGGTCCTGCTCAAGAGCTTTTCAAAAAGCCCTTTTTTGAGTCGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTATGTGTACTCAGGCCGAAAGCATATGGCTTCATATGCATATCATCGAGGACATTTTGGCTAATTCTCGTCAGGTATTCAAAGGCTCTGTTAAGTATGCTTGGACTACAGTTCCTACATACCCAAGtGGGGTGATTGGTTTTATGCTATGCTCTACTGAGGGGCCTGAGGTTGATTTCAAGCATCCAGTTAATCCTATAGACGCACACGATAAATCTGGAAGACCGCTGAGGTTTTATAACTCTGAGATTCATTCGGCAGCTTTCTGTTTGCCATCTTTTGCTAAGAAAGTGATTGATTATAAAGCAAATTG 995 0.4492 MSAESTVGSTDLPVKRQREDGENGVSMETEGVKEPDCISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIEICEIDKMVVDVSKQFFPDIAVGYEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFKKPFFESVAKALRPGGVMCTQAESIWLHMHIIEDILANSRQVFKGSVKYAWTTVPTYPSGVIGFMLCSTEGPEVDFKHPVNPIDAHDKSGRPLRFYNSEIHSAAFCLPSFAKKVIDYKAN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01125 331 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 122 135 IPR030373 -
Bva11g01125 331 Gene3D Vaccinia Virus protein VP39 96 331 IPR029063 -
Bva11g01125 331 PANTHER SPERMIDINE SYNTHASE-RELATED 1 331 - -
Bva11g01125 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 327 IPR029063 -
Bva11g01125 331 PIRSF Spermidine_synth 33 331 IPR030668 GO:0006595
Bva11g01125 331 TIGRFAM speE: spermidine synthase 45 321 IPR001045 GO:0003824
Bva11g01125 331 Pfam Spermidine synthase tetramerisation domain 44 98 IPR035246 -
Bva11g01125 331 Gene3D Spermidine synthase, tetramerisation domain 36 95 IPR037163 -
Bva11g01125 331 Pfam Spermine/spermidine synthase domain 101 288 - -
Bva11g01125 331 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 43 280 IPR030374 -
Bva11g01125 331 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 331 IPR001045 GO:0003824
Bva11g01125 331 CDD AdoMet_MTases 121 232 - -
Bva11g01125 331 Hamap Polyamine aminopropyltransferase [speE]. 44 327 IPR001045 GO:0003824
Bva11g01125 331 MobiDBLite consensus disorder prediction 13 29 - -
Bva11g01125 331 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01125 Bva-Chr11 12453241 12456704 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01125 K00797 - tcc:18609400 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01125 11 12453241 12456704 Bva11g01125 11 12453241 12456704 ECH