LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g01124	ATGTCTCGGGTTTACGTGGGGAATTTGGATCCTCGAGTTTCGGAGAGGGACCTTGAAGATGAATTTCGGATGTTCGGTGTTCTTCGCATTGTTTGGGTTGCTCGAAGACCACCAGGATACGCATTTATTGAGTTTGATGATAGGAGGGATGCCCTTGATCCAATTCATGCTTTGGATGGTAAGAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGTGGCCGTGGTGGACGTGGTCGTGGAGTGGAGGACTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCCAGAGAGTGCCGTTGGCGAATTGGTTCAGGAGGCTTAGGAAGTGGAAGACGACGAAGTCCTAGTCCTTATCGACGTCGTAGATGTCCAAGTTATGGGTATGGCCGCAGGAGTTATAGTCCCCGTGGAAGAAGATCTCCAAGGCGACGAAGCATATCACCTCGACGTGGTCGCAGCATCAGCAGGTCCCCCCCACACCGTTATTCTCGCCGTGACTCACCCTATGCCAATGTagATTA	536	0.5056	MSRVYVGNLDPRVSERDLEDEFRMFGVLRIVWVARRPPGYAFIEFDDRRDALDPIHALDGKNGWRVELSHNSKGGGGRGGRGRGVEDLKCYECGEPGHFARECRWRIGSGGLGSGRRRSPSPYRRRRCPSYGYGRRSYSPRGRRSPRRRSISPRRGRSISRSPPHRYSRRDSPYANVD	178

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g01124	178	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Bva11g01124	178	MobiDBLite	consensus disorder prediction	111	178	-	-
	Bva11g01124	178	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Bva11g01124	178	SMART	c2hcfinal6	89	105	IPR001878	GO:0003676\|GO:0008270
	Bva11g01124	178	ProSiteProfiles	Zinc finger CCHC-type profile.	89	104	IPR001878	GO:0003676\|GO:0008270
	Bva11g01124	178	Gene3D	-	77	150	-	-
	Bva11g01124	178	SUPERFAMILY	RNA-binding domain, RBD	3	82	IPR035979	GO:0003676
	Bva11g01124	178	SUPERFAMILY	Retrovirus zinc finger-like domains	79	108	IPR036875	GO:0003676\|GO:0008270
	Bva11g01124	178	Pfam	Zinc knuckle	89	104	IPR001878	GO:0003676\|GO:0008270
	Bva11g01124	178	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Bva11g01124	178	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21	2	176	-	-
	Bva11g01124	178	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	176	-	-
	Bva11g01124	178	Gene3D	-	2	69	IPR012677	-
	Bva11g01124	178	CDD	RRM_SRSF3_like	3	71	-	-
	Bva11g01124	178	MobiDBLite	consensus disorder prediction	140	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g01124	Bva-Chr11	12448180	12449708	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g01124	K12896		-	cit:102606665	213.001

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g01124	11	12448180	12449708	Bva11g01124	11	12448180	12449708	ECH