LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g01109	ATGAATCCTTTCTCTTCAGGAACCCGTTTGAGGGACATGATTCGGGCAATACGAGCTTCCAAAACTGCAGCAGAAGAACGTGCTGTTGTAAGAAAAGAGTGTGCTGCTATTCGAGCTGCAATCAATGAAAATGATCAAGACTATAGGCATCGGAATCTGGCTAAGTTAATGTTCATCCACATGCTAGGCTATCCCACACATTTTGGTCAAATGGAGTGCCTCAAGTTAATTGCTTCTCCAGGATTTCCAGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTAATGCTGGTTACAAACTCTTTGAAACAAGATCTTAATCACACAAATCAGTATATAGTTGGACTTGCTCTTTGTGCTTTAGGAAATATCTGTTCAGCAGAAATGGCTCGCGATCTTGCACCAGAGGTTGAGAGGTTGCTGCAATTTCGAGATCCAAATATCCGGAAGAAGGCAGCATTATGCTCTATTAGAATCATAAAGAAGGTTCCTGACTTGGCAGAGAATTTTATCAATTCTGCTGCTTCCCTACTTAAAGAGAAACATCATGGAGTTTTGATCACAGGGGTTCGGCTCTGTACAGTTCTCTGTCAGTTTAGCTCAGATGCCcttgaatattttagaaagAAATGCACAGAGAATTTGGTCAGAACTCTAAAGGATCTAGCAAACAGTCCTTATTCACCAGAGTATGACATCGCTGGTATTACAGATCCTTTTCTCCATATCAGATTGATCAAGCTTTTACGAGTGTTGGGTGAAGGTGATACTGACTCTAGTGACCTTATGAATGACATACTTGCTCAGGTGGCTACAAAGACCGAGTCAAATAAAGTTGCAGGAAATGCCATTTTATATGAGTGTGTCCAAACAATCATGAGCATTGAAGATAATGGTGGCTTACGAGTGCTTGCCATCAACATCCTGGGAAGATTTTTGTCAAACCGTGACAACAATATCAGATATGTGGCATTAAATATGCTGATGAAGGCTGTAACAGCTGATGCTCAGGCAGTGCAGAGGCATCGGGCAACAATTCTGGAATGTGTAAAGGATTCTGATGCATCAATTCGGAAAAGAGCACTTGAACTTGTTTACATTCTGGTGAATGAAAGTAATGTGAAGCCCTTAACAAAAGAGCTTATAGATTATCTGGAAGTCAGTGATCAAGATTTTAAAGGGGACCTTACTGCAAAAATTTGCTCTATTGTTGCAAAGTTTTCCCCGGAAAAGCTCTGGTACATTGATCAAATGCTCAAGGTTTTATCTGAGGCTggaaattttgtaaaagatgaaatatggCATGCCTTAATTGTCATGATAACCAATGCTTCCGACCTACATGGATATACAGTAAGGGCATTATACAGGGCATTTCAAACATCAGCAGAACAGgAAAGTCTTGTTCGAGTTGCAGTGTGGTGCATTGGAGAATATGGTGACAtgttagttaataatattggAATGCTTGACATAGAAGAGCCAATAACGGTGACAGAGTCAGATGCTGTTGATGTTGTGGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAAGCGATGGCTTTGGTTGCCCTGTTAAAACTCTCGTCACGTTTTCCTTCTTGTTCAGAGAGGATCAAGGATATAGTTGTTCAGTACAAGGGGAACCTTGTGCTTGAATTGCAGCAAAGATCTAtagaattcaattcaattattgCAAAGCATCAAAATATTAGGTCTACGCTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTTCATTGGTAGGAGGTCTGGTTCAGCTTCAGCTCCAACAGGACCTTCAGTTAATCTTCCAAATGGAGTTGCCAAAACTCCTGTAGCGCCTCTTGTAGATTTGCTTGATCTAAGTTTAGATGATGCTCCTGCACCTAGCCCATCTGGTGCTGATCTTCTTCATGACCTTCTTGGTGTTGATTTATCACCAGCACCACAACAGCCCGgtTCTGATCAAACTCCAAAAAGTGGCACGGATGTTCTTTTGGATCTTTTATCTATTGGATCTACTCCTGCACAAAGTAGCTCATCTACGACAGACCTTTTATCCTCCAGTAATAATAGCAAAATGCCAGTTTCACCATTGGATGATCTCTCATCTCTTTCACTTTCTACAAGAGCAACTTCAAATACCGGAGCTGCTCCTATGATGGATTTGATGGACGGATTGTCTTCCAGCCCACCAACAGaaaacaaTGGATCTGTTTATCCATCAATAACTGCATTGGAGAGCAGCTCCTTGAGGGTGACCTTCAATTTCTCGAAACAATCAGGAAACCCACAAACAACAAATATCAAGGCTACCTTTACGAATTTGTCATCTAATGCATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGTTTCTTCAATTGCAATTAGATCCGGCTAGCAGCAATACTCTCCCTGCTAGTGGTAATGGGTCCATCACGCAAGATTTGAGAGTTACTAATAACCAACATGGAAAGAAATCTCTTGTAATGCGCATAAGGATAGCATACAAGATAAATGGCAAGGATACATTGGAAGAAGGACAAATCAATAATTTCCCTCGTGATTTATG	2615	0.3985	MNPFSSGTRLRDMIRAIRASKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINSAASLLKEKHHGVLITGVRLCTVLCQFSSDALEYFRKKCTENLVRTLKDLANSPYSPEYDIAGITDPFLHIRLIKLLRVLGEGDTDSSDLMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAVTADAQAVQRHRATILECVKDSDASIRKRALELVYILVNESNVKPLTKELIDYLEVSDQDFKGDLTAKICSIVAKFSPEKLWYIDQMLKVLSEAGNFVKDEIWHALIVMITNASDLHGYTVRALYRAFQTSAEQESLVRVAVWCIGEYGDMLVNNIGMLDIEEPITVTESDAVDVVEIAIKRHASDLTTKAMALVALLKLSSRFPSCSERIKDIVVQYKGNLVLELQQRSIEFNSIIAKHQNIRSTLVERMPVLDEATFIGRRSGSASAPTGPSVNLPNGVAKTPVAPLVDLLDLSLDDAPAPSPSGADLLHDLLGVDLSPAPQQPGSDQTPKSGTDVLLDLLSIGSTPAQSSSSTTDLLSSSNNSKMPVSPLDDLSSLSLSTRATSNTGAAPMMDLMDGLSSSPPTENNGSVYPSITALESSSLRVTFNFSKQSGNPQTTNIKATFTNLSSNAYTDFVFQAAVPKFLQLQLDPASSNTLPASGNGSITQDLRVTNNQHGKKSLVMRIRIAYKINGKDTLEEGQINNFPRDL	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g01109	871	MobiDBLite	consensus disorder prediction	656	675	-	-
	Bva11g01109	871	PIRSF	AP1_gamma	6	871	IPR017107	GO:0005794\|GO:0016192\|GO:0030121
	Bva11g01109	871	SMART	alpha_adaptinc2	748	868	IPR008152	GO:0006886\|GO:0016192
	Bva11g01109	871	ProSiteProfiles	Gamma-adaptin ear (GAE) domain profile.	751	868	IPR008153	-
	Bva11g01109	871	Gene3D	-	2	594	IPR011989	-
	Bva11g01109	871	MobiDBLite	consensus disorder prediction	685	717	-	-
	Bva11g01109	871	Pfam	Adaptin N terminal region	27	578	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Bva11g01109	871	Pfam	Adaptin C-terminal domain	754	868	IPR008152	GO:0006886\|GO:0016192
	Bva11g01109	871	SUPERFAMILY	ARM repeat	25	593	IPR016024	-
	Bva11g01109	871	Gene3D	-	731	870	-	-
	Bva11g01109	871	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	5	871	-	-
	Bva11g01109	871	PANTHER	AP-1 COMPLEX SUBUNIT GAMMA	5	871	-	-
	Bva11g01109	871	SUPERFAMILY	Clathrin adaptor appendage domain	729	870	IPR013041	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g01109	Bva-Chr11	12366118	12380051	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g01109	K12391		-	gmx:100802164	1443.33

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g01109	11	12366118	12380051	Bva11g01109	11	12366118	12380051	ECH