Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01084 ATGAGATTCCATCTCTTGCCTTTGGCAATATGCTTGGCTCTCTCACTCTCTTCCACTCAAGTTTCAGCCCGATTCTTCCCCAACATAACCTCCATTCCCCCTTGGTTAGCAAAGAACGTGCCACGCGGGGTGTGGGATGCCTTCGCCAACTTCACTGGCTGCCATCCCGGCCAGAAGTACGATGGCTTGCATAAGCTCAAAAAGTACTTCAACCACTTCGGCTACATCCCAAACGCGCCGTCGAATTTCACCGACGATTTCGACGACCAACTCGAAGAAGCCATCAAGAAGTACCAGAAGAATTTCAATCTCAACGTGACCGGCGAGCTCGACGATAAGACTCTTCAGCAGATTATAAAGCCGCGTTGTGGCGTCGCCGATATAATCAATGGCACCACCACGATGAACTCTGGGAAGGAGAATACGACGTCGGCTACTAATAACACACGCTTCCACACAGTCTCACACTACACATTCTTCGAGGGGAGACCTCGATGGCCGGAGGGGAAGCAGGAACTAACATATGCGTTCTGGCCGGGTAATCAATTAACGGACCAGGTAAAAAGTGTGTTCGCCACGGCGTTTGACCGGTGGGCAGAAGTGATCACATTGACTTTCACGGAAACGACTTCGTATAACACAGCAGATATCAAGATTGGGTTCTTCGCCGGGGACCACGGCGATGGGGATCCGTTTGATGGGGTTTTGGGGACGCTGGCCCACGCGTTTTCGCCAACCAATGGGAGGCTCCATTTGGATGGGGAGGAGAATTGGGTGGTCTCGGGAGACGTGACGCAGTCGTCGCTGTCGTCGTCGGTGGATTTGGAATCGGTGGCTGTTCACGAGATTGGGCATTTATTGGGGTTGGGTCACTCGTCGGAGCAGGACGCGATTATGTATCCGACGATATCGTCGCGGACGAGGAGGGTGGAACTCAACGTGGATGATATTAATGGGATTCAGGAGCTGTACGGCTCGAATCCGAATTACACTGGTtcctccaccaccaccgcATCAGAGGAGAGGGGCACCAGCCATGGTCACCACCTCACTGTTGGTCGCAGACAAATGTTCTTATTACCAAACGGAACCAAGGCAGGAAACGGATCGAGCCGGAACCGGCTGATCCAAACGGCGAGCGAAGTTTCCCATCATTGGACTGAACCATGGGCCCTCCTAAGCCCATCCCCTTATACCGAAAGCTGGGTCCAGGGAGCACGTCTCAAGTGGTTGTGTCCGAAGTGCAGCATGATTGGTGACTTGCCTCCAAGTGAATA 1277 0.5215 MRFHLLPLAICLALSLSSTQVSARFFPNITSIPPWLAKNVPRGVWDAFANFTGCHPGQKYDGLHKLKKYFNHFGYIPNAPSNFTDDFDDQLEEAIKKYQKNFNLNVTGELDDKTLQQIIKPRCGVADIINGTTTMNSGKENTTSATNNTRFHTVSHYTFFEGRPRWPEGKQELTYAFWPGNQLTDQVKSVFATAFDRWAEVITLTFTETTSYNTADIKIGFFAGDHGDGDPFDGVLGTLAHAFSPTNGRLHLDGEENWVVSGDVTQSSLSSSVDLESVAVHEIGHLLGLGHSSEQDAIMYPTISSRTRRVELNVDDINGIQELYGSNPNYTGSSTTTASEERGTSHGHHLTVGRRQMFLLPNGTKAGNGSSRNRLIQTASEVSHHWTEPWALLSPSPYTESWEQRIS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01084 407 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 159 329 - -
Bva11g01084 407 SUPERFAMILY PGBD-like 53 128 IPR036365 -
Bva11g01084 407 MobiDBLite consensus disorder prediction 325 341 - -
Bva11g01084 407 PANTHER MATRIX METALLOPROTEINASE 15 353 - -
Bva11g01084 407 PANTHER MATRIX METALLOPROTEINASE 15 353 - -
Bva11g01084 407 CDD ZnMc_MMP 165 325 IPR033739 GO:0008237|GO:0008270
Bva11g01084 407 Pfam Matrixin 169 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bva11g01084 407 Gene3D Collagenase (Catalytic Domain) 52 331 IPR024079 GO:0008237
Bva11g01084 407 SMART col_5 162 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bva11g01084 407 MobiDBLite consensus disorder prediction 325 347 - -
Bva11g01084 407 PRINTS Matrixin signature 191 206 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva11g01084 407 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva11g01084 407 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva11g01084 407 PRINTS Matrixin signature 215 243 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva11g01084 407 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva11g01084 407 Pfam Putative peptidoglycan binding domain 62 117 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01084 Bva-Chr11 12227534 12229320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01084 - - cit:102616119 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01084 11 12227534 12229320 Bva11g01084 11 12227534 12229320 ECH