Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva11g01043 | ATGAACTCTTTGACATGTATAGCAAAGCACCCCAGCATTGCGTTGATCAAATCATGCACGAGCCTCAAAGAGGCGAAGCAAATACACACCCAATTGCTTGTTCAAGGCATTCTCAACGACCCTCGCCTTTATGGTCAATTTATTGCTACCATAGCCCTCGAGAACCCAAGCAATCTTCACTATTCCAATCAGCTCCTAGAACAATTTGAGAACCCCAACATATTTACTTTGAACTCTATGATCAGAGCATACTCCAAGAGCTCCACTCCTcaaaaaagttttcattttttcaataaaatcctCCATTCTAAGAAAAATCTCTCACCTGACAATTACACATTCAATTTCTTGGTTCGCACATGTGCGCAGCTTATGGCTCAGCAGACGGGTTTGTCAGTTCACGGTGCAGTTATTAAGTATGGGTTTGAGAATGACCCACATGTGCAAACTgggttaatttttatgtatgcTGAATTGGGTTGTCTAAGTTCATGCCATGGAGTTTTTGGGTGGATTCCAGAACCAGATTTAGTTTGCCAGACTGCAATGGTGAATGCTTTTGCAAAATGCGGGGACATAGATTTGGCACGGCAGCTGTTTGATAAAATGCCTAAAAGAGATTCTGTTGCATGGAGCGCAATGATTGCTGGGTATGCTCAATGTGGGCGATCAAGGGAGGCCTTAAGTTTATTCCAATCTATGCAAATGGAGAATGTGAAAGTTAATGAGGTGTCTATGGTTTCAGTGTTATCTGCATGCACCGACTTGGGAGCATTGGATCAAGGAAGATGGGCTCATGCATATATAGAGAGAAATAAACTTAGGATGACGGTTACACTAGGAACAGCACTTATTGACATGTATGCAAAATGTGGTAACATCGATAAGGCCATGGAAATTTTTTGGggaatgaaggaaaagaatgtTTACACTTGGAGCAGTGCCATTGATGGGTTAGCCATAAATGGGCTTGGAGAGAAGTGTCTTAGTCTTTTCTCCCTCATGAAACAAGGTGGTATTCAGCCAAATGAAATCACCTTTATTACAGTGTTAAGAGGGTGCAGTGTGGTTGGACTGGTTGAGGAAGGTCGCAAGCATTTTGAATCAATGAAGAAACTATATGGGATTGAACCTGAACTTGAGCATTATGGCTTAATGGTTGATTTATATGCTCGAGCAGGACGCTTAGAAGAAGCCTTCAACTTCATAAATAGCATGCCTATGAAGCCCCATGCCGGTGCATGGAGCGCATTGCTTAATGCTTGCAGAAAATACAATAACAGGGAACTTTGGGAGCTTGCTCTAAGAAAGATTGTGGAGCTGGAGGCCAACAATGATGCTGCTTATGTCCTATTATCGAACATTTATGCTGATGATAAGAATTGGGAAGGAGTTGTCACTTTACGGCATACCATGAAGGCTAATAATGCAGAAAAGATCCCTGGTTGTAGTGCCATAGAGATCAACGGTGAAGTTCATGCTTTTACCGTTGGGAATAAGTCTCATCCCCAGGTAAAACCAGATTCTAACAATGCTAGCTA | 1541 | 0.4062 | MNSLTCIAKHPSIALIKSCTSLKEAKQIHTQLLVQGILNDPRLYGQFIATIALENPSNLHYSNQLLEQFENPNIFTLNSMIRAYSKSSTPQKSFHFFNKILHSKKNLSPDNYTFNFLVRTCAQLMAQQTGLSVHGAVIKYGFENDPHVQTGLIFMYAELGCLSSCHGVFGWIPEPDLVCQTAMVNAFAKCGDIDLARQLFDKMPKRDSVAWSAMIAGYAQCGRSREALSLFQSMQMENVKVNEVSMVSVLSACTDLGALDQGRWAHAYIERNKLRMTVTLGTALIDMYAKCGNIDKAMEIFWGMKEKNVYTWSSAIDGLAINGLGEKCLSLFSLMKQGGIQPNEITFITVLRGCSVVGLVEEGRKHFESMKKLYGIEPELEHYGLMVDLYARAGRLEEAFNFINSMPMKPHAGAWSALLNACRKYNNRELWELALRKIVELEANNDAAYVLLSNIYADDKNWEGVVTLRHTMKANNAEKIPGCSAIEINGEVHAFTVGNKSHPQVKPDSNNAS | 513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva11g01043 | 513 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 308 | 342 | IPR002885 | - | |
| Bva11g01043 | 513 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 17 | 505 | - | - | |
| Bva11g01043 | 513 | Pfam | E motif | 425 | 487 | IPR046848 | - | |
| Bva11g01043 | 513 | Pfam | PPR repeat family | 307 | 354 | IPR002885 | - | |
| Bva11g01043 | 513 | Pfam | PPR repeat family | 207 | 253 | IPR002885 | - | |
| Bva11g01043 | 513 | Pfam | PPR repeat family | 72 | 122 | IPR002885 | - | |
| Bva11g01043 | 513 | TIGRFAM | PPR: pentatricopeptide repeat domain | 310 | 344 | IPR002885 | - | |
| Bva11g01043 | 513 | TIGRFAM | PPR: pentatricopeptide repeat domain | 209 | 243 | IPR002885 | - | |
| Bva11g01043 | 513 | TIGRFAM | PPR: pentatricopeptide repeat domain | 282 | 309 | IPR002885 | - | |
| Bva11g01043 | 513 | TIGRFAM | PPR: pentatricopeptide repeat domain | 179 | 208 | IPR002885 | - | |
| Bva11g01043 | 513 | Pfam | PPR repeat | 181 | 206 | IPR002885 | - | |
| Bva11g01043 | 513 | Pfam | PPR repeat | 382 | 407 | IPR002885 | - | |
| Bva11g01043 | 513 | Gene3D | Tetratricopeptide repeat domain | 171 | 277 | IPR011990 | GO:0005515 | |
| Bva11g01043 | 513 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 176 | 206 | IPR002885 | - | |
| Bva11g01043 | 513 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 207 | 241 | IPR002885 | - | |
| Bva11g01043 | 513 | Gene3D | Tetratricopeptide repeat domain | 12 | 170 | IPR011990 | GO:0005515 | |
| Bva11g01043 | 513 | Gene3D | Tetratricopeptide repeat domain | 282 | 501 | IPR011990 | GO:0005515 | |
| Bva11g01043 | 513 | PANTHER | OS01G0715700 PROTEIN | 17 | 505 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva11g01043 | Bva-Chr11 | 11991423 | 11993458 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva11g01043 | 14 | 503 | Glycoside Hydrolase | AT3G49170 | 29.659 | 3.56e-79 | 263 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva11g01043 | - | - | zju:107427122 | 792.341 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva11g01043 | 11 | 11991423 | 11993458 | Bva11g01043 | 11 | 11991423 | 11993458 | ECH |