Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01009 ATGACTTTGACTAACGTCTTATGGCTGAGGCAGAGTTTTGGAGTAAAAACCAGAAACTATTCTATGGTTGCTTCCGATCACAAGCTCATTTCTCTGTTGAAATCATGCAAAAAAGCTTCTGAAATCTATCCAATTCATGGCTACATGGTTAAAACTGCTCTCACCAGTGTACCTTTCACCATGAGCAAGCTCCTCGCAGCTTCCATCCAAGATATGGGATACGCAGCATCCATTTTCAGTGATATACAAAGCCCAAATCTTTTCATGTGCAATACAATGATGAGAGGCTATTCTATTAGTGATTACCCAAATCAAGCTTTTGCAATATTCAATAACTTGAGGTCTCGAGGTATCGTGCTTGATCAGTTTTCTTTCATCACGATACTCAAAGCTTGTGGTCGGCAATTAAAGATAGGGATTGGCCAGGGGATCCATGGGATTGCAGTGAGGTCTGGGAATAGATCTTTTGTCAATGTGAAGAATAgccttcttcatttttattgtgtttgcTCAAGAATTGAAGATGCCCGCAAGCTGTTTGATGAATCTCCTGAAGAAAACGATTTGGTGTCATGGAATACTACGATGGGTGGCTATCTTCTTGCTTCACAGCCTCTTATGGTTTTGGGTTTGTTCAGGGAAATGACTGGGAGAGGGCTTAAACCAAGTGTTGCCACTGTGTTGAGTCTCTTGTCAGCTGCTAGTGATGTAAGCAATTTTGTTTCCGGGAAGTCTCTACACGGGCATTGTCTCCGAATTGGTTTTACTTCTGATTTGAATGTTCTTACTGCTTTGATTGATATCTATGCAAAAACAGGACATATGAATTTGGCACACCGGGTTTTCGAAGGAGTTGATGAAAAGGATGTTGTTTTATGGAACTGTTTAATAGGCAAGTATGCAAGAAATGGCATGGTAGAAGAAGCATTGGCTTTGCTCCAGCATATGCAACTTGAAGGAATAAAACCCAACTCTTGCACCATGGCGGGGCTGCTTTCGGCATGTCGTGCATCTGGAGCAATGCACGTAGGACGAAAAGTAACTGATTATATAGAAGAGGGGAAACTAGAAGTTGATGCAGTTCTAGGAACTGCTCTTGTTGACATGTATTCTAAATGTGGCTTTCTAGATAAGGCTCTGGAGATTTTTGAGAGGATGGATTGTAAAGATGTTAAGTCTTGGACAGCCATGATTTCAGGTCTTGCGGTTCATGGACAACCAACTAATGCTATTAAACTTTTCAATAGGATGGAGAAGGAGGGGTACAGGCCTAATGAAGTTACCCTTTTGGCAATTTTGAATGCTTGTAGTCATGGAGGGTTTGTAATAGAGGGAGTGTCATTTTTCAAGAGAATGGTTGAAGAATATGGCTTTTCACCTCAGATTGAACATTATGGATGTGTTATTGATCTTTTGGGACGAGCAGGGATGCTAGAGGAAGCATACAAATTGATAAAGAGCTTACCCATTAAGGGTGATGCTACTGCATGGCGTACACTGCTCTCTGCTTGCAGAGTCTATGGAGAAACTGAATTGGGAGAATGTGCGAAACAAGTGATAACCAAAATCTATAAGAAACATCCTACAGATTCTCTCCTTATTTGTAGCGCTTACGCCATCGCCGGAAGACTTCCGGATCATATAAGATTGCAGGAAATGAAGGAGTCAAATGTTGTCAGAGAAAGGGGGAGGGTAACTGAAGTGGAAGATGAAAAGATGGTGAAGGAGGCTGGACTCagcataattgaaattta 1754 0.4071 MGYAASIFSDIQSPNLFMCNTMMRGYSISDYPNQAFAIFNNLRSRGIVLDQFSFITILKACGRQLKIGIGQGIHGIAVRSGNRSFVNVKNSLLHFYCVCSRIEDARKLFDESPEENDLVSWNTTMGGYLLASQPLMVLGLFREMTGRGLKPSVATVLSLLSAASDVSNFVSGKSLHGHCLRIGFTSDLNVLTALIDIYAKTGHMNLAHRVFEGVDEKDVVLWNCLIGKYARNGMVEEALALLQHMQLEGIKPNSCTMAGLLSACRASGAMHVGRKVTDYIEEGKLEVDAVLGTALVDMYSKCGFLDKALEIFERMDCKDVKSWTAMISGLAVHGQPTNAIKLFNRMEKEGYRPNEVTLLAILNACSHGGFVIEGVSFFKRMVEEYGFSPQIEHYGCVIDLLGRAGMLEEAYKLIKSLPIKGDATAWRTLLSACRVYGETELGECAKQVITKIYKKHPTDSLLICSAYAIAGRLPDHIRLQEMKESNVVRERGRVTEVEDEKMVKEAGLSIIEI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01009 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Bva11g01009 513 Gene3D Tetratricopeptide repeat domain 76 174 IPR011990 GO:0005515
Bva11g01009 513 Gene3D Tetratricopeptide repeat domain 1 68 IPR011990 GO:0005515
Bva11g01009 513 Gene3D Tetratricopeptide repeat domain 175 282 IPR011990 GO:0005515
Bva11g01009 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Bva11g01009 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Bva11g01009 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Bva11g01009 513 Pfam PPR repeat 192 214 IPR002885 -
Bva11g01009 513 Pfam PPR repeat 393 417 IPR002885 -
Bva11g01009 513 Pfam PPR repeat 90 112 IPR002885 -
Bva11g01009 513 Pfam PPR repeat 119 149 IPR002885 -
Bva11g01009 513 Pfam PPR repeat family 217 264 IPR002885 -
Bva11g01009 513 Pfam PPR repeat family 14 61 IPR002885 -
Bva11g01009 513 Pfam PPR repeat family 318 366 IPR002885 -
Bva11g01009 513 Gene3D Tetratricopeptide repeat domain 292 505 IPR011990 GO:0005515
Bva11g01009 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Bva11g01009 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 513 - -
Bva11g01009 513 PANTHER - 1 513 - -
Bva11g01009 513 TIGRFAM PPR: pentatricopeptide repeat domain 293 320 IPR002885 -
Bva11g01009 513 TIGRFAM PPR: pentatricopeptide repeat domain 18 50 IPR002885 -
Bva11g01009 513 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Bva11g01009 513 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01009 Bva-Chr11 11773251 11775005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01009 225 498 Glycoside Hydrolase AT3G49170 26.786 1.05e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01009 - - lang:109338874 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01009 11 11773251 11775005 Bva11g01009 11 11773251 11775005 ECH