Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00872 ATGTGGGCCAGCTTAGCCAAGCGAGCTTCTTCAAGGAAGTTCAAGTTGCCTTATTCAAGTCTTACCAAATTCTCCCAAGAACCGAATTTTCACGAGAAAATAAAGCACTCCGAGACACAAACGCGTGGTTACCCAGTTCTGGATTCCTGTAAAGTTGGTTTTTTAGCTTCAGAACATGGATTACGGAGACCTGATTTTTGCCCTTCTGAGAAcccttttggtttttccttaTCTAGAGGTTATGCTACCGTTGCTGAGGCAGTTGTTTCCACAGACACTGAAGAAGATTTTTCTGGTTCTGAGGAAATTCATGAATTGTTAAGGGAAATGAATGAAGTCACGACACAACTCCATTCAGAGCAGCCAAAGAATATGGTGGCGGGTATTCCAATCTACAAGTATAAAATGCTTAGAAAAAGACAGATAAAGTTGGAGACAGAAGCATGGGATGAGGCAAGCAAAGAATATCAAGAGCTTCTGGAAGATATGTGTGAGCAGAAACTTGCACCAAATTTGCCTTATATGAAGTCGTTATTCCTTGGTTGGTTTGAGCCCTTGAAAGACGCAATTGCTGCGGACCAAGAGGTGAGCAAAAAGAACAAGCATAAGTTAACTCACGCCCCTTATTTTGATAAGTTACCAGCAGACATGATGGCCGTGATTACCATGCATAAGTTGATGGCGTTGTTGATGACAAATACTAATGGGATAGGCAGCGCTCGAGTAATCCAAGCCGCACTTCAAATAGGCGAAGCCATAGAACAAGAGGCTAGAATATACAGATTtatggagaagaaaaagaagaagaagagtgtAAATGATGACGACCCTTACAGTAAATCTGATTCTGCAACTATAGGAGTAGGAAAGCTGGCTgaagaacaagagaaaatggatACCGAGCAGGAGAAACTAAGGAAAAGAGttgctaatttaattaaaaaacagaaGATGAAACAAGTGATCAGAATAGTAAGAGAACATGATGATTCAAAGCCCTGGGGACAGGAAGGTCAAGTAAAGGTTGGCAGCCGCCTAGTGCAATTGTTAATGGAAACAGCCTACATACAACCCCCACTGGATCAATTGGGAGATGGTCCACCTGACATACGCCCTGCATTTAAGCACACTCAAAAAACTGCTACATCAGAATCACTGAAGCATTGTAGGAGATATGGTGTTATTGAATGTGACCCCTTAATCCAGAAAGGCATTGAGAAAGCCgCCAGACACATGGTCATCCCATATATGCCGATGTTGGTGCCACCTCTTAAGTGGACAGGGTATGACAAAGGAGCATACTTGTTTTTGCCATCTTATGTTATGCGAACACATGGAGCAAAGCAACAACGTGAGGCAGTTAAGAGAGCTCCAAAGAAGCAACTAGAACGAGTTTTTGAGGCCCTTGATTACCTTGGAAGTACCAAATGGAGGGTAAACAAAAGGGTTCTCAGTGTAATAGATCGGATATGGGCTAGTGGAGGGTGTCTTGCAGACTTGGTGGACCGTGAAGATGTTCCCCTTCCAGAGGAACCAGACACAGAAGATGAAGTGGAAATTCGGAAATGGAAGTGGAAAGTCAAAGCtgccaaaaaggaaaataaagagagacaTTCACAGCGGTGTGACATAGAACTTAAACTGGCTGTTGCACGGAAAATGAAGGATGAAGAAGGCTTCTACTATCCCCACAATCTTGATTTCAGAGGGCGTGCATATCCAATGCACCCTTACTTGAACCATCTTGGTTCTGATCTATGCAGAGGCATACTAGAATTTGCAGAGGGGCGACCTTTAGGAAAGTCAGGTTTGCGCTGGTTGAAGATACATTTGGCAAATTTGTATGCAGGCGGTGTGGACAAGTTATCACATGAGGGCCGAGTAGCATTTACTGAGAACCATCTCGATGATATATTTGACTCTGCAGACAGGCCTCTTGAAGGAAGACGCTGGTGGTTGGAAGCAGAGGATCCTTTTCAGTGCTTGGCAGCATGTTTTAATCTCTCTGAAGCATTGAGAAGCCAATGTCCTGAGGCTGCTATTTCACATATGCCTGTCCACCAGGATGGTTCATGTAATGGCTTACAACACTATGCAGCCCTTGGGAGGGACAAGttgGGAGCCTCTGCAGTCAATCTTGTTGGTGGAGACAAGCCTGCTGATGTTTACTCAGGAATTGCTGCCAGAGTACTTGATATCATGAGAAGAGATGCAGAGAAAGAtcctcaaacttatccacatgctTTGCATGCAAGACATTTAATCAACCAGGTGGATAGGAAATTGGTGAAACAGACAGTGATGACATCAGTCTACGGTGTGACTTATGTTGGTGCTCGGGACCAGATAAAGAGAAGGCTAAAAGAGCGTAATGCCATCGAGGATAATCCAGAATTGTTTGCTGCTTCCTGCTATGCAGCAAAAACCACTTTGACTGCTTTGGAAGAGATGTTTGAGGCTGCAAGAAGTATCATGAATTGGCTTGGAGATTGTGCAAAGGTGATAGCTTCGGAGAATCAACCAGTGCGATGGGTCACTCCACTTGGACTTCCTGTTGTACAACCCTACAGACAATTTGGAAGACATTTTATCAAGACTTCCCTTCAGGTATTGACGCTAAAAAGGGAGACAGATAAGGTCATGGCTAAGCGGCAGAGAACAGCATTTCCTCCAAATTTTGTTCACTCTCTTGATGGATCTCACATGATGATGACTGCAATTGCTTGTAAAAGAGCAGGATTGAAATTTGCAGGAGTACATGATTCATATTGGACACATGCATGCGATGTTGACGAAATGAACAGGATACTCAGGGAAAAGTTTGTTGAACTCTACGAGGCCCCAGTACTGGAAAATCTGTTGGAAAGCTTTGAGAAGTCCTTCCCCACATTAGGGTTTCCTCCCTTACCGGAGAGGGGAGACTTCAATTTGAGAGAGGTTCTGGAGTCTActtattttttcaacta 2966 0.4177 MWASLAKRASSRKFKLPYSSLTKFSQEPNFHEKIKHSETQTRGYPVLDSCKVGFLASEHGLRRPDFCPSENPFGFSLSRGYATVAEAVVSTDTEEDFSGSEEIHELLREMNEVTTQLHSEQPKNMVAGIPIYKYKMLRKRQIKLETEAWDEASKEYQELLEDMCEQKLAPNLPYMKSLFLGWFEPLKDAIAADQEVSKKNKHKLTHAPYFDKLPADMMAVITMHKLMALLMTNTNGIGSARVIQAALQIGEAIEQEARIYRFMEKKKKKKSVNDDDPYSKSDSATIGVGKLAEEQEKMDTEQEKLRKRVANLIKKQKMKQVIRIVREHDDSKPWGQEGQVKVGSRLVQLLMETAYIQPPLDQLGDGPPDIRPAFKHTQKTATSESLKHCRRYGVIECDPLIQKGIEKAARHMVIPYMPMLVPPLKWTGYDKGAYLFLPSYVMRTHGAKQQREAVKRAPKKQLERVFEALDYLGSTKWRVNKRVLSVIDRIWASGGCLADLVDREDVPLPEEPDTEDEVEIRKWKWKVKAAKKENKERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSHEGRVAFTENHLDDIFDSADRPLEGRRWWLEAEDPFQCLAACFNLSEALRSQCPEAAISHMPVHQDGSCNGLQHYAALGRDKLGASAVNLVGGDKPADVYSGIAARVLDIMRRDAEKDPQTYPHALHARHLINQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERNAIEDNPELFAASCYAAKTTLTALEEMFEAARSIMNWLGDCAKVIASENQPVRWVTPLGLPVVQPYRQFGRHFIKTSLQVLTLKRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTAIACKRAGLKFAGVHDSYWTHACDVDEMNRILREKFVELYEAPVLENLLESFEKSFPTLGFPPLPERGDFNLREVLESTYFFN 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00872 988 MobiDBLite consensus disorder prediction 270 299 - -
Bva11g00872 988 Gene3D - 597 675 - -
Bva11g00872 988 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 758 772 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva11g00872 988 SUPERFAMILY DNA/RNA polymerases 132 988 IPR043502 -
Bva11g00872 988 PANTHER DNA-DIRECTED RNA POLYMERASE 14 988 - -
Bva11g00872 988 Gene3D - 706 895 - -
Bva11g00872 988 SMART RPOL_N_2 139 474 IPR029262 -
Bva11g00872 988 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 685 696 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva11g00872 988 Pfam DNA-directed RNA polymerase N-terminal 140 474 IPR029262 -
Bva11g00872 988 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 14 988 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva11g00872 988 Coils Coil 291 315 - -
Bva11g00872 988 Gene3D - 129 473 IPR037159 -
Bva11g00872 988 Pfam DNA-dependent RNA polymerase 597 988 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva11g00872 988 Gene3D - 475 557 IPR024075 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00872 Bva-Chr11 11099988 11109135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00872 K10908 - jre:108989412 1498.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00872 11 11099988 11109135 Bva11g00872 11 11099988 11109135 ECH