Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00259 ATGGCCATTTCCACTTCCCCAGACTGGTCTTTTGCTTACTCCAAATGTTCCAGAACCCGCGTTCTTACCTCATTTCACACATGCCAATTCCCTTCTTTCTACCCTTTTTCAAGCTCCAAGTCACGATTTTTCCCAGTAAAATCCTCAAAATCTTCCTCCCCAATCTTAGAAGAAGAATCTCCCAACACCCCCATCGTGAAACTAGACTTAAATTTTGCAGATGTGCAGCAATATTCGAAGCCGGGTActgaaaatttgaatgattttatatgtgGGTTACTTGAAGATCCTCAAACTGAAGCACTGGGTTGTGAATACTACCAAAGATTGAAAGAGAGGCCAGAGTATAGACCAGAGAAACCAACTTTAAGGCTTCTGATCAGGTACTTGTTGAGACTGAAGAAATGGGATTTGATTCAAACCGTTATCGAAGATTTCAAGGTTTATCATGTTTTGCCAGATAGATTCACTTGTTCTAAAACGATTAGTGTTTGTATAAAGTCTAGAAAATTCAAGATTTCTGAGACCCTGCTTGAGATTTTTCAATCTGATAGTGAAGTTGCTGTCTTTGCTTTTCGTTCTGCCATGAAAAGTTATAATTGGCTTCATATGTATAGGAGCACTGTTTCAGTTCATGAGAGAATGAAAAATGCTAACGTAGTTGGTGATTCAAGATGCTATTTGCACATTATGGAAGCTTACTTGAGAATTGGTGATTGTGAGAAAGTGGTTCAATTGTTTCATGAATTTCAAAGTAGGAAACTTTTAGGTTCAACAAGATATTTGCCTAAGATATGTGGGACTCTCTTAGAATCATTAGGCGAATCAGGGCGTGCTTTTGAAGCTCTTAAGTACTTTAGAGAGCTTACCAAGCAAGGGGCTTTTGAAGATTCTTTTTACTCTAAGTTGATATGCTCCTTTGCAAAGATAGGTGAGGTAGATATGGCTGAGGAGGTTCTTAGAGAAGCCAAAAGCAAGATGACGTTAAGGGATCCGGAGGTCTATACGAAGCTTGTTCTGATGTATGTTGAAGTGGGCTTGCTGGAGAGGACCCTTGAAGTTGTTGAGGCAATGAATGAAGCAAATGTGAAGGTTACTGATTGTGTATTATGTGCTATTGTCAATGGCTTCAGCAAAAGGAGAGGGTTTCGAGCTGCAATTCAAGTTTTTAAGCAGCTAGTCTCTCAAGGGTATGAACCAGGTCAAGTGACCTATGCTTCAATTATCAATGCCTATTGCCGTCTTGGGAAATATACTGAAGCAGAGAAACTGTtctcagagatggagcaaaaGGGGTTTGATAAATGTGTAGTGGCTTATTCAAGCATGGTTGTGATGTATGGGAGAACAGGAAGAGTAAGAGAAGCAATGAGACTAGTGgcaaagatgaaagaaagaggGTGTGAACCAAATGTGTGGGTTTACAATTCCTTGATAGACATGCATGGGAGGGTTAAAAATTTGAGGCAGGTTGAGAAGCTGTGGAAGGAaatgaaacgaagaaagatcgCGCCAGATAAGGTAACCTACACTAACATCATTAGTGCTTATTGTAAGGAAAAGGAGTTTGAAACatgcataaaattttacaatgagTATAGGATTAATGGGGGAGTGCTTGACAAAGCCATGGCAGGTGTAATGGTTGGGGTTTTCTCAAATGCTAGTCAAATTGATGAACTGGTAAAGCTATTACATGATATGAAGATGGAAGGAACTAGCATAGATGAGAGACTGTATAGGTCTGCTCTGAATGCTTTCACAGAAGCTGGCTGCAGATGCAAGCAAGATGGTTGCAAGAGAGCTTCTACATGGTGTAAGAGCAGTTTAAGTTTCCAAAATTG 1844 0.3796 MAISTSPDWSFAYSKCSRTRVLTSFHTCQFPSFYPFSSSKSRFFPVKSSKSSSPILEEESPNTPIVKLDLNFADVQQYSKPGTENLNDFICGLLEDPQTEALGCEYYQRLKERPEYRPEKPTLRLLIRYLLRLKKWDLIQTVIEDFKVYHVLPDRFTCSKTISVCIKSRKFKISETLLEIFQSDSEVAVFAFRSAMKSYNWLHMYRSTVSVHERMKNANVVGDSRCYLHIMEAYLRIGDCEKVVQLFHEFQSRKLLGSTRYLPKICGTLLESLGESGRAFEALKYFRELTKQGAFEDSFYSKLICSFAKIGEVDMAEEVLREAKSKMTLRDPEVYTKLVLMYVEVGLLERTLEVVEAMNEANVKVTDCVLCAIVNGFSKRRGFRAAIQVFKQLVSQGYEPGQVTYASIINAYCRLGKYTEAEKLFSEMEQKGFDKCVVAYSSMVVMYGRTGRVREAMRLVAKMKERGCEPNVWVYNSLIDMHGRVKNLRQVEKLWKEMKRRKIAPDKVTYTNIISAYCKEKEFETCIKFYNEYRINGGVLDKAMAGVMVGVFSNASQIDELVKLLHDMKMEGTSIDERLYRSALNAFTEAGCRCKQDGCKRASTWCKSSLSFQN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00259 614 Gene3D Tetratricopeptide repeat domain 260 379 IPR011990 GO:0005515
Bva11g00259 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Bva11g00259 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Bva11g00259 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Bva11g00259 614 TIGRFAM PPR: pentatricopeptide repeat domain 438 472 IPR002885 -
Bva11g00259 614 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
Bva11g00259 614 TIGRFAM PPR: pentatricopeptide repeat domain 474 506 IPR002885 -
Bva11g00259 614 TIGRFAM PPR: pentatricopeptide repeat domain 403 433 IPR002885 -
Bva11g00259 614 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 1 594 - -
Bva11g00259 614 Pfam PPR repeat family 470 519 IPR002885 -
Bva11g00259 614 Gene3D Tetratricopeptide repeat domain 95 259 IPR011990 GO:0005515
Bva11g00259 614 SUPERFAMILY TPR-like 223 532 IPR011990 GO:0005515
Bva11g00259 614 Gene3D Tetratricopeptide repeat domain 380 613 IPR011990 GO:0005515
Bva11g00259 614 Pfam PPR repeat 397 429 IPR002885 -
Bva11g00259 614 Pfam PPR repeat 438 468 IPR002885 -
Bva11g00259 614 Pfam PPR repeat 227 253 IPR002885 -
Bva11g00259 614 Pfam PPR repeat 300 325 IPR002885 -
Bva11g00259 614 Pfam PPR repeat 267 293 IPR002885 -
Bva11g00259 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Bva11g00259 614 PANTHER OSJNBA0088A01.11 PROTEIN 1 594 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00259 277 591 Glycosyltransferase AT1G05670 25.316 2.61e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00259 - - cam:101512527 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00259 11 6025897 6028011 Bva11g00259 11 6025897 6028011 ECH