Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01007 ATGGACCTTCGTCTAGGGTTTATCAGTTTCAATTTTCTGTTACAGGTTTGTCTGATTTTATCTACAATAGAAGCAGAGAATTTGGAAACAAGGCTGCTTTTGACATCCAATGCCTCAATTCAGGGGGGAAGGCATTCCGAGGATTACTGTGCAATGTATGACATCTGTGGCAAACGCAGTGATGGAAAAGTACTGAACTGTCCATATGGGTCTCCAGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCAACAATTACAGGCAATGTTTGTTGTACAGAAGCTCAGTTTGACACATTACGGACTCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCGGCTTGCTTAAGAAACTTTTTGAACCTGTTCTGTGAGCTTACGTGCTCTCCTAATCAGAGTTTATTTATCAACGTGACTTCAGTTGCTCTGGTTGGTGGTAATAGGACAGTGGATGGAATTGATTTCTATGTGATTGATACTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGATGTGAAGTTTGGCACCACAAATTCTCGTGCTATAGAATTTATTGGTGCTGGtgctcaaaattttaaagTGAGGTTGCTTTTGGCAGAGTGGTTTGCTTTTATTGGTCGAAAAGCTGGCCTTAATGTACCTGGTTCaccatataaaattacattccTGCCAAATCCTACTGAGTCATCAGACATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGATGTTCTTGTGGTGATTGTCCTTCATCATCAGCATGCTCCAAAACAGCACCCGCTATCACCCATAGGAGGGATTCCTGCTCCATTAGAGTTGGGTCTTTAACGGTGAAATGTGCTGACATGATTTTGGCAGTTTTATACATCATACTGATTACTGTATTTTTGGGTTGGGGATTATATCATCGATTGAGAGAAAGAAATCCGTCATCTAGAACAAAATCAGTGCCTAGCATCATTACTAGCGATATGCTGCATTCTGTTAATATGCAAAAGGATGAGAACCTCCCCATGCGgATGCTTGAAGATGCTCCACAAATCAGAAATGGGGTCCAGCTCTCAGCGGTGCAAGGTTACATGTCAAATTTTTACAGGATATACGGATCTTATGTGGCTAGAAATCCAATAATGGTTTTGTCTTCATCGTTGGCTATAGTTCTTCTACTTTGTCTTGGTCTTATCCGATTTGAGGTTGAGACACGGCCAGAGAAGCTTTGGGTAGGGCCTGGGAGTAAAGCTGCACAAGAGAAGCAGTTTTTCGACAGCCATCTTGCTCCCTTTTACAGAATTGAACAGCTCATATTGGCAACATTTCCCGATCCTGTGAGTGGTATGTCACCACGAATTGTGTCAGAGGACAACATtaagtttctttttgaaatacaaaaaaagGTTGATGCAATTCGAGCTAATTATTCTGGGCTGATGGTGTCTCTGGATGATATCTGTATGAAGCCGTTAGATGAAGATTGTGCCACTCAAAGTGTCTTGCAGTACTTCAAAATGGATcccaaaaattttgataattatggGGGAGTTGAACATCTAAATTACTGCTTTGAgcATTATTCTTCAGCAGACACATGTATGACTGCATTTAAAGGTCCACTTGATCCAAGCACTGTATTAGGGGGTTTCTCTGGTAACAATTATTCTGAGGCTTCTGCATTTATCATAACTTATCCGGTAAATAATGCTATTGATGAAGAGGGGAATGAAACTTCCAAGGCAGTTGCTTGGGAGAAGACCTATATTCAGTTGATGAAGGATGAGCTGTTACCAATGGTGCGGTCTAAAAATTTgacactttctttttcatctgaAAGCTCCATTGAGGAAGaactaaaaagagaaagtactGCTGATGCCATTACTATATTGATAAGCTATCTAGTGATGTTTGCTTATATATCCCTTACTTTAGGGGATACGCCACATGCCTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGCCTTTCTGGAGTAATGCTTGTTATGCTGTCTGTCCTTGGATCAGTTGGATTTTTTAGTGCTGTTGGTGTAAAATCTACACTGATCATCATGGAAGTTATTCCATTTCTTGTTCTAGCGGTTGGGGTGGATAATATGTGCATATTAGTTCATGCTGTAAAGAGGCAACAAGTGGAGTTGCCTTTGGAAGGAAGAATAAGCAATGCACTTGTGGAAGTTGGACCATCCATAACATTAGCTAGTGTAGCCGAGGTTTTAGCATTTGCAGTTGGAAGTTTTATTCCTATGCCAGCATGCCGTGTGTTCTCTATGTTTGCAGCATTGGCTGTtcttttggactttcttctgCAAGTTACTGCTTTTGTAGCTCTGATAGTTCTTGACTTTTTGCGAGCGGAGGATAAGAGAGTTGATTGTTTTCCTTGCATAAAAGTCTCTTCAATGCATGCCGACACTGATATAGGTACTGACCAGAGAAAACCTGGTTTATTGGCTCGATACATGAAGGAGGTTCATGCACCCATTCTAAGTATTTGGGGAGTCAAAATAGTTGTCATTGCTATTTTTTTGGCATTTGCATTGGCTAGCATTGCATTATGTACTAGAATCGAACCTGGTTTAGAGCAGAAAATAGTTCTTCCACGGGATTCATATCTACAGGGATATTTCAATAATGTTTCAGAATATCTCAGAATTGGACCgcctttatattttgttgtgaAGAACTATAATTACAGCTCAGAATCAAGGCACACAAATCTGTTGTGCTCCATCAGCCAATGCACTTCGGACTCCCTGTTAAATGAGATTGCGAAAGCATCCCTAGTGCCAGAGTCGAGTTACATTGCCAAGCCAGCTGCTTCATGGCTTGATGATTTTCTAGTTTGGATGTCTCCAGAAGCATTTGGATGCTGCAGAAAATTCATAAATGGGAGCTATTGTCCCCCTGATGATCAGCCACCCTGCTGTGCCCATGATGAAGGTTCTTGTCGTGAAGTTGGAGTATGTAAAGATTGCACAACGTGTTTTCGTCACTCAGATCTCAATAATGATCGTCCATCTACAACTCAATTTAGGGAGAAATTGCCATGGTTTCTTAATGCTCTACCTTCTGCTGACTGTGCAAAAGGTGGTCACGGGGCTTACACTAGTAGTGTTGAACTGAAAGGCTATGAGAATGGTATTATTCAAGCTTCTTCATTCCGTACATATCATACTCCACTCAACAAGCAGATTGACTATGTTAATTCCATGAGGGCCGCTCGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTGAAGATTGAAATCTTCCCATATTCAgtgttttatatgttttttgaGCAATACCTTGATATCTGGAGGACTGCACTGATCAATCTTGCCATAGCTATTGGTGCAGTATTTATCGTGTGTTTGGTTATCACTTGTAGTTTATGGAGTTCAGCAATCATTTTGTTGGTATTGGCAATGATTGTCGTTGATGTTATGGGTGTGATGGCAATTCTGAACATCCAGTTGAATGCTGTCTCTGTTGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAATTTTGTGTGCATATGACTCATGCTTTCACTgtAACAAGGGGAGACAGAGAATTACGTGCTAAGGAGGCTCTAGGTACAATGGGAGCTTCAGTCTTCAGTGGGATCACACTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTTTCAAGAACAGAAGTTTTTGTGATTTATTACTTTCAAATGTACCTGGCTTTGGTGCTTCTCGGTTTCTTGCACGGGCTTGTATTCTTGCCGGTGGTGTTGAGCATCTTTGGTCCACCTTCAAGATGTGTGCTCGTTGAGCAGAGAGAAGATCAGTCGTCGACTTCTTCACAGATATG 3902 0.3939 MDLRLGFISFNFLLQVCLILSTIEAENLETRLLLTSNASIQGGRHSEDYCAMYDICGKRSDGKVLNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVALVGGNRTVDGIDFYVIDTFGEGLYESCKDVKFGTTNSRAIEFIGAGAQNFKVRLLLAEWFAFIGRKAGLNVPGSPYKITFLPNPTESSDMKPMNVSTYSCGDISLGCSCGDCPSSSACSKTAPAITHRRDSCSIRVGSLTVKCADMILAVLYIILITVFLGWGLYHRLRERNPSSRTKSVPSIITSDMLHSVNMQKDENLPMRMLEDAPQIRNGVQLSAVQGYMSNFYRIYGSYVARNPIMVLSSSLAIVLLLCLGLIRFEVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATFPDPVSGMSPRIVSEDNIKFLFEIQKKVDAIRANYSGLMVSLDDICMKPLDEDCATQSVLQYFKMDPKNFDNYGGVEHLNYCFEHYSSADTCMTAFKGPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDEEGNETSKAVAWEKTYIQLMKDELLPMVRSKNLTLSFSSESSIEEELKRESTADAITILISYLVMFAYISLTLGDTPHASSFYISSKVLLGLSGVMLVMLSVLGSVGFFSAVGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQVELPLEGRISNALVEVGPSITLASVAEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDFLRAEDKRVDCFPCIKVSSMHADTDIGTDQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFLAFALASIALCTRIEPGLEQKIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESRHTNLLCSISQCTSDSLLNEIAKASLVPESSYIAKPAASWLDDFLVWMSPEAFGCCRKFINGSYCPPDDQPPCCAHDEGSCREVGVCKDCTTCFRHSDLNNDRPSTTQFREKLPWFLNALPSADCAKGGHGAYTSSVELKGYENGIIQASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDVMGVMAILNIQLNAVSVVNLVMSVGIAVEFCVHMTHAFTVTRGDRELRAKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFQMYLALVLLGFLHGLVFLPVVLSIFGPPSRCVLVEQREDQSSTSSQI 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01007 1300 ProSiteProfiles Sterol-sensing domain (SSD) profile. 635 798 IPR000731 -
Bva10g01007 1300 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 613 798 - -
Bva10g01007 1300 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1279 IPR004765 GO:0005319|GO:0016021
Bva10g01007 1300 Pfam Niemann-Pick C1 N terminus 48 283 IPR032190 -
Bva10g01007 1300 Pfam Patched family 460 913 IPR003392 GO:0016021
Bva10g01007 1300 Pfam Patched family 1061 1278 IPR003392 GO:0016021
Bva10g01007 1300 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 7 1297 - -
Bva10g01007 1300 PANTHER PATCHED FAMILY PROTEIN 7 1297 - -
Bva10g01007 1300 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1086 1283 - -
Bva10g01007 1300 Gene3D Multidrug efflux transporter AcrB transmembrane domain 589 806 - -
Bva10g01007 1300 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1088 1279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01007 Bva-Chr10 7387663 7402209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01007 43 1298 Miscellaneous Gene Families AT1G42470 74.522 0.0 1901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01007 K12385 - gmx:100813262 2143.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01007 10 7387663 7402209 Bva10g01007 10 7387663 7402209 ECH