Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00945 ATGCAACAAGGAGATTACAGCTCTGCTCCATATTACCAATTCCCCCCTAATCCTGCGGATCCACCCCCTAACCCTTACGCCTCCGCGCCACCGTTCAATCCCGGTTACGCTCCTTCAGATTACCCGTCTTACGCCTCCAATTATCAATCGTACCTGCAAAATCCAGCTCCAGCTCCTGCTCCGGCTCCTGCCCCTCCTACTGCTCCTTCATATCCTCCAACTTCCAACCCAAATTTGCAGTCATTCAATTCATCTTCTCAGGCCTCCTCCTTTCCTCCGTTTGAATCTCCTATTCCATACCAACCACCGTCGCAGCAACAATCTTACAATCCCCCGTATGATCAGCATCAAACGGCCCCAAGTTATGCTCCTCCCCCCTCCTCTATTTCTCctaatcccaatcccaatccttCATATTCGCCGTTGTACTCGGCTCCGTACACTCACCCTGGATCCTCTGTGCCTCCTACATACGAAAATCCTTATGAAAATCCTGTGAACGTTGATCATGGTAGTGCTTATTTCGATGACAGGTACGGAAGTTTTAACCGGAGCCGGTCGGATTTGGGATCGGATATGTATGGGAAGCGTCAGGATATCGGGCTTTCGAGGTATGACTGTGGTCGTGATGAAGTTTACGGGGATGGTGTGTATGCTTATGAAGGGGGGAAAACGGAACCATATGGAGCTCGGGGTACGGCTCCTAAGTCGTCTACTTGGTCCGCCTTTGATGACTATGGGAGGTCAATCAGTTTTCCTTCTCCTAAACAATCCTCTGTAACAAGTAAGATTGCCAAAGCAGTGCCGAAGGCTGATGCCCATGAAGATGTAAAAAGCGGGGTGCAAAAATTTCGGGTCAAACTATTGGCAGAAAGTGGTGGTCAGAGCACTATGGATGTTCTGTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAGTACCAGTCGCACATTGAGAATATATCCTCTTGAGAACATTACAAGATGTGAAAGATACGACTCATCTACCTTTGcattttggtccaagagtccTGTGGATATTGAGCCAAGACGAATCAGATTGCAATCCAATAGCTACACTACCAACACACTTCTGGATACAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGCAGGAGGCCTGCTGAATCATTGAAAACAAATGAACAGTCagcagaaaagaagaaaggcctGGGTGATTGGATGAACTTGATCAAACCTGCCAATGAGGAGAAGGATCATTGGGTCCCAGATGAAGCGGTCTCAAAATGTACCGGGTGTGGCACCGATTTTTCAGCTTTTGTTCGTAAGCATCACTGTAGGAACTGTGGGGATATTTTCTGTGACAAATGTACACATGGTAGAATTGCTCTAACTGCTGATGAGAATGCTCAGCCAGTACGAGTCTGTGACAGATGCATGGCGGAAGTAACTCAGAGGCTCAGTAGTGCTAAAGAGGCAGCAAGCAAGCCTGCGTTGCAAAGTCATGAAGATCTTGCCAGGAAGCTTCAGGAGGAGCTGGAGAGGAATCGGAAGACATCAGGCTCCAAATCTGATGATTCTGGAAGACGGATGAAGGAAGTTGCGTGTCCTACTTGCACTGTCCATTTACAGGTCCAAGTACCTAGCTCAGGTTCGGAGACTATAGAGTGTGGGGTCTGCCAACACCCATTCCTCGTCAGTGCTCATTA 1706 0.4637 MQQGDYSSAPYYQFPPNPADPPPNPYASAPPFNPGYAPSDYPSYASNYQSYLQNPAPAPAPAPAPPTAPSYPPTSNPNLQSFNSSSQASSFPPFESPIPYQPPSQQQSYNPPYDQHQTAPSYAPPPSSISPNPNPNPSYSPLYSAPYTHPGSSVPPTYENPYENPVNVDHGSAYFDDRYGSFNRSRSDLGSDMYGKRQDIGLSRYDCGRDEVYGDGVYAYEGGKTEPYGARGTAPKSSTWSAFDDYGRSISFPSPKQSSVTSKIAKAVPKADAHEDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPSTSRTLRIYPLENITRCERYDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPAESLKTNEQSAEKKKGLGDWMNLIKPANEEKDHWVPDEAVSKCTGCGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLSSAKEAASKPALQSHEDLARKLQEELERNRKTSGSKSDDSGRRMKEVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00945 568 Pfam FYVE zinc finger 419 483 IPR000306 GO:0046872
Bva10g00945 568 MobiDBLite consensus disorder prediction 141 160 - -
Bva10g00945 568 SUPERFAMILY FYVE/PHD zinc finger 418 492 IPR011011 -
Bva10g00945 568 MobiDBLite consensus disorder prediction 124 140 - -
Bva10g00945 568 MobiDBLite consensus disorder prediction 1 165 - -
Bva10g00945 568 MobiDBLite consensus disorder prediction 14 37 - -
Bva10g00945 568 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 483 IPR017455 -
Bva10g00945 568 MobiDBLite consensus disorder prediction 40 54 - -
Bva10g00945 568 MobiDBLite consensus disorder prediction 74 94 - -
Bva10g00945 568 SUPERFAMILY PH domain-like 285 346 - -
Bva10g00945 568 MobiDBLite consensus disorder prediction 107 123 - -
Bva10g00945 568 CDD FYVE_EEA1 420 482 - -
Bva10g00945 568 MobiDBLite consensus disorder prediction 56 73 - -
Bva10g00945 568 Coils Coil 498 518 - -
Bva10g00945 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 488 IPR013083 -
Bva10g00945 568 PANTHER PROTEIN FREE1 1 568 IPR045893 GO:0036258|GO:0043130
Bva10g00945 568 SMART fyve_4 415 484 IPR000306 GO:0046872
Bva10g00945 568 PANTHER PROTEIN FREE1 1 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00945 Bva-Chr10 7052931 7057670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00945 411 484 EF-hand Containing Proteins AT3G14270 36.250 1.32e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00945 - - cpap:110818203 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00945 10 7052931 7057670 Bva10g00945 10 7052931 7057670 ECH