Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00939 ATGCATAGCACCGGGTACTTGCATGCCATGGGAGGTAAAATGAATCATGAGAGCATGATTTTTGGCCATGCAGTTGTTATGGGACCAAGTCGgataaaagagaagagggaaaaagaaaggaatgaGCTCCGCCATCTTGTAGGAAAAAATCTCAATGTTCTTAGTCAGATGGAGGGCATGGACCTTGAAATGTACAAAGACACTGTTCTTCCGAAGGTTTTAGAGCAGGTTGTCAACTGTAAAGATGAACTTGCTCAATTTTATCTGATGGAGTGCATAATTCAGGTCTTTCCAGATGAGTACCACTTGCAGACTCTTGAAACACTGTTAGGTGCTTCCCCCCAGTTGCAGCCAACAGTAGATATCAAGACTGTACTATCTCAGTTAATGGAACGGTTGTCAAATTATGCTGCCTCAAGTAAATTTGTGTTGCCTGAATTTCTGCAAGTGGAAGCATTTGCCAAATTAAGCAATGCAATTAGCAGGGCAAGAAGAAGTAAACAGAGAATAAAAAAGGAGTCTCCCTTCTTTGTGCATACAGATAATAGTTTTTATCAACTGCAGGTGATAGAAGCACAGGTTGACATGCCTATTGTAGGAGCAATAGGTTTGCATGTCTCACTCCTTACATTTACCCTCCGTGTACATCCAGATAGGCTCGATTATGTTGATCAAGTATTGGGCGCCTGTGTTAAGAAAATTCCTGGGAAACCAAAGCTTGATGACAATAGAGCAACAAAACCAATTGTTGCACTTTTAAGTGCTCCATTGGACAAATACAATGATGTCATTACAGCTTTAATACTGTCAAATTATCCGCTTGTGATGGACCGTCTTaacaatgaaacaaataaattaatggcCATGGTTATTATCCAAAGTATAATGAAGAATAATACTTGCATCTCTACTGCTGATAAGGACTTATCAAGGATTTGGATGGAACAGCTGTGGATGAGGTTGATGAAGAAGATTTCAATGAGAACAAAATTATGTTGCTCGCCTTATACGCATGCTTCAAAATGGGGAACCAGAGGAAATGTTAAAGATCATATGCACTGTGAAGAAGCATATCATAGTGGAGGACCAAGGCGCCTACCTTTCACAGTTCCAGCCCTTATTTTTTCTGCACTTAGGTTGGTTAGACGGTTGCAAGGGCAGGATGGAGATGTAGTTGGAGGAGAAGTTCCTACAACACCACAAACAATATTTCAGCTCTTGAATGAGAAAAATGaagctcttttttctttaccaTCTCCTGAACTGGCATTGAGGCTGTATCTGCAATGTGCTGAGgactccaaAGCTCAGGTAACTGCAATCCATCTAATCATAGGGACTCTTCAGAAAATGAATGGCTTTGGTGTTGAGAACAGAGATACTTTAACGCACAAGGCCACTGGGTATTCAGCAAAAATCTTTAAGAAACCTGATCAATGCCGAGCAGTTTATGCGTGCTCTCATCTCTTCTGGGTTGATGATCCGGAGGGTATCAAGGATGGAGAAAGGGTATCACTTTGCCTTAAGCGTGCCTTGAGGATGGCTAATGTAACCAGGGGTAGCAGTGGTCCAGTTACACTATTTGTTGAAATACTGAACGAGTCAAAGGGTGGTTTATTGGGTGAGAAATATGATTCTATTAAGGTTTG 1649 0.3936 MHSTGYLHAMGGKMNHESMIFGHAVVMGPSRIKEKREKERNELRHLVGKNLNVLSQMEGMDLEMYKDTVLPKVLEQVFPDEYHLQTLETLLGASPQLQPTVDIKTVLSQLMERLSNYAASSKFVLPEFLQVEAFAKLSNAISRARRSKQRIKKESPFFVHTDNSFYQLQVIEAQVDMPIVGAIGLHVSLLTFTLRVHPDRLDYVDQVLGACVKKIPGKPKLDDNRATKPIVALLSAPLDKYNDVITALILSNYPLVMDRLNNETNKLMAMVIIQSIMKNNTCISTADKDLSRIWMEQLWMRLMKKISMRTKLCCSPYTHASKWGTRGNVKDHMHCEEAYHSGGPRRLPFTVPALIFSALRLVRRLQGQDGDVVGGEVPTTPQTIFQLLNEKNEALFSLPSPELALRLYLQCAEDSKAQVTAIHLIIGTLQKMNGFGVENRDTLTHKATGYSAKIFKKPDQCRAVYACSHLFWVDDPEGIKDGERVSLCLKRALRMANVTRGSSGPVTLFVEILNESKGGLLGEKYDSIKV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00939 530 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 340 413 - -
Bva10g00939 530 PANTHER VACUOLAR SORTING PROTEIN 35 340 413 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva10g00939 530 Coils Coil 134 154 - -
Bva10g00939 530 PANTHER VACUOLAR SORTING PROTEIN 35 169 288 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva10g00939 530 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 27 145 - -
Bva10g00939 530 PANTHER VACUOLAR SORTING PROTEIN 35 414 515 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva10g00939 530 PANTHER VACUOLAR SORTING PROTEIN 35 27 145 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva10g00939 530 Gene3D - 414 517 IPR042491 -
Bva10g00939 530 Gene3D - 328 413 IPR042491 -
Bva10g00939 530 Pfam Vacuolar protein sorting-associated protein 35 413 515 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva10g00939 530 Pfam Vacuolar protein sorting-associated protein 35 28 412 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva10g00939 530 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 414 515 - -
Bva10g00939 530 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 169 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00939 Bva-Chr10 7032353 7037836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00939 K18468 - gmx:100778365 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00939 10 7032353 7037836 Bva10g00939 10 7032353 7037836 ECH