Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00892 ATGTCTGCGGTCGTAGCAGAGAACAAGGttgaggaagagaaagaggtgGTGAAAGGGGGAGAGCTCTTGTTCTGTGGCGGTACCTGTTGGGATATCGTAGGTCGTCGCAAAGGCTCCGTAGAAGGCAACTTGGTCTCTCCAACAAGGCTTCGTCCTCTAGTCGGGGTTGCTATTCGATTCATTGCCTCTGGTTGCGCATCGTGTCATTGCGTGGCATTGGATGTCGAAGGGCGTTGCTATACATGGGGACGCAATGAGAAGGGGCAACTAGGTCATGGAGATACAATTCGGCGTGATAGGCCAACTGTGGTGTCTGAACTTTCCAAGTACAAAATTGTCAAAGCTGGGGCCGGGAGGAGCCACACAGTGGTTGTTACAGAGGATGGACAATCCCTTGCCTTTGGTTGGAATAAACATGGACAATTAGGTTCAGGTTCTGTAAGAAATGAAATTGAGTCATCTCCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCATTGAAGGGGCTTCTATACTGACTGCAGGGCTTCCACAGTATGGACAGCTTGGGCACGGAACAGATAATGAGTATAATTCTAAAGACAGCTCTGTAAAGTTGGTTTATGAAGCCCAACCACGCCCTCGAGCAATTGCTACACTTGCAGGGGAAACAATAGTCAAAGTTGCATGTGGAACAAATCACACAGTGGCTGTGGATAAGAATGGCTTTGTTTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGGCACAGGGAGCAGAAGGATGAGTGGGTCCCACGGCGTGTTGATGTTTTTCAGAACAGGAATGTTCTGCCTCCTGATGCAGTGATTTCAGCTGGTTCTGTCAACTCTGCATGTACTGCAGGTGGAGGGCAATTGTATATGTGGGGTAAAATAAAGAACACTGGTGATGACTGGATGTATCCAAAGCCTCTAATGGATTTAAGTGGTTGGAATTTACGATGCATGGATTCGGGCAACATGCACCATTTTGTTGGGGCTGATTCCTCGTGCATAAGTTGGGGCCATGCTCAATATGGAGAGCTGGGATATGGCCCTAATGGACAGAAGTCTTCAGCTGTACCCAAAAAAGTGGATATTCTTGAGGGTATGCATGTTATTAGTGTTGCTTCTGGTATGGGTCATTCCATGGTTATTGTTGATAGAACAAATGTCAGTGAACGACTTGACCAGCTTGATATATATGATGGCAAAGCCTCTGATGAAGTGAATGAGAAACCTGTATATGAAACTCCAGTATCCAAGCAGACTTCAAGAAAGAGTAGGAAAGGGACTGACAATTccaagaagaggaagaagtcAAAAGATTCATCCGactcagaagaagaagaagaggatgatGAAGAAAGTGAGGACAGCGAAGAGCAAGTGAATGGTGAGGCAGAGAAGAAAAGGGGTAAAGGTCGAGGTAAGGCATCCAAAAAGTTAGCTGCTGAGGGGAAAGGTTCTGGGCGCGGCCGTGGTCGCCCTCCAGCAAATAAGAAGCTCTCTCAAACAACTGGTAAGAGAGGACGACCCCGGAAGTCGTCATG 1592 0.4529 MSAVVAENKVEEEKEVVKGGELLFCGGTCWDIVGRRKGSVEGNLVSPTRLRPLVGVAIRFIASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIRRDRPTVVSELSKYKIVKAGAGRSHTVVVTEDGQSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNSKDSSVKLVYEAQPRPRAIATLAGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVDVFQNRNVLPPDAVISAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPNGQKSSAVPKKVDILEGMHVISVASGMGHSMVIVDRTNVSERLDQLDIYDGKASDEVNEKPVYETPVSKQTSRKSRKGTDNSKKRKKSKDSSDSEEEEEDDEESEDSEEQVNGEAEKKRGKGRGKASKKLAAEGKGSGRGRGRPPANKKLSQTTGKRGRPRKSS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00892 530 SUPERFAMILY RCC1/BLIP-II 18 402 IPR009091 -
Bva10g00892 530 MobiDBLite consensus disorder prediction 477 502 - -
Bva10g00892 530 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Bva10g00892 530 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Bva10g00892 530 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Bva10g00892 530 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Bva10g00892 530 Pfam Regulator of chromosome condensation (RCC1) repeat 247 285 IPR000408 -
Bva10g00892 530 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Bva10g00892 530 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Bva10g00892 530 PANTHER PROTEIN RCC2 6 518 IPR028641 -
Bva10g00892 530 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Bva10g00892 530 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Bva10g00892 530 MobiDBLite consensus disorder prediction 460 476 - -
Bva10g00892 530 Gene3D - 9 159 IPR009091 -
Bva10g00892 530 Gene3D - 160 426 IPR009091 -
Bva10g00892 530 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Bva10g00892 530 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Bva10g00892 530 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Bva10g00892 530 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Bva10g00892 530 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Bva10g00892 530 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Bva10g00892 530 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Bva10g00892 530 MobiDBLite consensus disorder prediction 423 530 - -
Bva10g00892 530 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00892 Bva-Chr10 6785718 6791254 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00892 - - gmx:100802977 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00892 10 6785718 6791254 Bva10g00892 10 6785718 6791254 ECH