Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00885 atgagcaAAAGACCGCCACCTGATCCTGTTGCAGTGCTACGAGGCCATCGCGCATCTGTGATGGACGTTTGTTTTCACCCGTTAAAAACAGTACTATTCTCCGGTTCCGCTGACGGTGAATTACGGATATGGGACACCATTCAGTTTCGGACGGTGTCATCTGCATGGGTACATAGTGCCACCCATGGGATTCTTGCCGTTGCCAGCAGTGCGTCCCTGGGGACCAACAAGCTTGTCAGTCAGGGTAGGGATGGAACTGTCAAAGTTTGGGATATTGCTGATGGTGGTTTGTCCAGGATTCCATCTCTTACAATCAAGACAAACTCTTACCATTTTTGCAAGCTTTCCTTGGTAAAGGGGCCTTCTAGGTGGTCTAAGGAAGGTGAAGTGTCAAAAGATTCTCATAGAATGGAGCTAGGGGAAAATTCTAGTAGAGAAACTCTGGAGGTTAATGGAGGAGAGGCACATTCCAACCAAAGCTGTTCAGAAATATTTGCAGAAAATACATATTCTGAAGGGCTACATTATGTTGCTATATCAGGGGAGCAGTCTTCTGAGGTTGAAATTTGGGATCTTAAATCAGCAGAGAGATCTGCACGATTACCTCTCAACATCCCTAGTGGTGTTCCAAATGTTTCTACCAAAGACAAAGGAATGTGCATGgcacttcaattatttttaccatCTAAATCACAGGGATTTCTAAATGTCTTGGCTGGATACGAGGATGGTTCTATGCTTTTGTGGGATATAAGAAATCCCGGAGTTCCAGTTACTTCTGTGAAGTTCCATTCTGAGCCAGTTTTGAGCATTTATATTGATGGGTTTGGCAAAGGGGGTATATCGGGAGCTGCAGATGACAAGATTGTAATGTATAGTATGGATGATACTACGAAGCCGAAAGTGTCAGACCAAAAAGTCAGCTATCGTTTAGACTCTAAAATCGTTAAATATGACAAGAGTGTGGGGGTTTTGCCCCTTTTCAAGTTAGAACCAATTTCACAAGATGACTGGGGTACATGTGTAGTCAAGAAGGAAATCAGTTTGGAGCGCCCTGGTATTTCAGGCACTTCAATTCGACCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGACCATAGAGTAAGGATATATAATTATAGCAAAGGAAATGCTCTGGCAATATTGAAGTATCACCATGCCACGTGCAATGCTGTTACCTATTCGTCTGATTGTAAGCTTTTGGCATCTGCATCAGAAGACACAACAGTGGCACTATGGGAATTATATCCTCCTCAAACTCAAACTTG 1289 0.4275 MSKRPPPDPVAVLRGHRASVMDVCFHPLKTVLFSGSADGELRIWDTIQFRTVSSAWVHSATHGILAVASSASLGTNKLVSQGRDGTVKVWDIADGGLSRIPSLTIKTNSYHFCKLSLVKGPSRWSKEGEVSKDSHRMELGENSSRETLEVNGGEAHSNQSCSEIFAENTYSEGLHYVAISGEQSSEVEIWDLKSAERSARLPLNIPSGVPNVSTKDKGMCMALQLFLPSKSQGFLNVLAGYEDGSMLLWDIRNPGVPVTSVKFHSEPVLSIYIDGFGKGGISGAADDKIVMYSMDDTTGTCVVKKEISLERPGISGTSIRPDGKIAATAGWDHRVRIYNYSKGNALAILKYHHATCNAVTYSSDCKLLASASEDTTVALWELYPPQTQT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00885 389 PANTHER - 3 387 - -
Bva10g00885 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 100 IPR001680 GO:0005515
Bva10g00885 389 Pfam WD domain, G-beta repeat 346 380 IPR001680 GO:0005515
Bva10g00885 389 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Bva10g00885 389 PANTHER TRANSDUCIN BETA-LIKE 3 3 387 - -
Bva10g00885 389 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Bva10g00885 389 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Bva10g00885 389 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Bva10g00885 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Bva10g00885 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Bva10g00885 389 Gene3D - 123 387 IPR015943 GO:0005515
Bva10g00885 389 MobiDBLite consensus disorder prediction 125 155 - -
Bva10g00885 389 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Bva10g00885 389 MobiDBLite consensus disorder prediction 125 143 - -
Bva10g00885 389 Gene3D - 2 97 IPR015943 GO:0005515
Bva10g00885 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 389 IPR001680 GO:0005515
Bva10g00885 389 SMART WD40_4 254 293 IPR001680 GO:0005515
Bva10g00885 389 SMART WD40_4 342 381 IPR001680 GO:0005515
Bva10g00885 389 SMART WD40_4 300 339 IPR001680 GO:0005515
Bva10g00885 389 SMART WD40_4 6 45 IPR001680 GO:0005515
Bva10g00885 389 SMART WD40_4 48 91 IPR001680 GO:0005515
Bva10g00885 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 389 - -
Bva10g00885 389 SUPERFAMILY WD40 repeat-like 4 381 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00885 Bva-Chr10 6749108 6754315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00885 10 97 Miscellaneous Gene Families AT5G08390 34.091 9.62e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00885 K24770 - gmx:100800482 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00885 10 6749108 6754315 Bva10g00885 10 6749108 6754315 ECH