Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00861 atgttgCTTCGACGTGTGCCAATGATGGCAGTTACTGTCGCGGCGACACTCCCGATCCGTTATCGAAAGTGGCAATTTCTGCCATCCTTTAGCATCAGAAATGAACTTCCCTTTCCTCACTCGGCTTTCGTCGGCCCTCGAAACGTTGTCGTTGTTTCCTTCTGCTCCAGCTCAGGCGCATCCTCCAGATTAGCCGGCCAACTTCATGAATATTCAGCCAAACCTGGTAGTCTGAAACCCGGTCTTTATCTAGTTGGAACACCAATTGGGAATCTTGAAGACATCACCTTAAGAGCTCTCCGCATTCTGAAGTCAGCAAACGTGATACTTTCAGAAGATACAAGGCATTCAGGAAAGCTGCTTCAGTACTATAATATCAAAACACCCCTtATGAGTTATCACAAGTTCAATGAATCACAAAGGGAACAGGTAGTGTTGAAGAGGTTGAAACAGGGTGAGATTGTGGCGCTAATAAGTGATGCTGGAACACCAGGCATCAGTGATCCTGGTATGGATTTGGCTAAATTATGTGTCAGTGAAAATATCCCTGTTGTTCCTATACCTGGGCCTTGTGCTTTGATATCAGCTCTTTCTGCGTCGGGTTTGTCTACAGATGAATTTACATTTGTTGGTTTTCTTCCAAAACATGCCGGATCAAGAAGAAAGAGACTCATGGTTTCCGCAAATGAAACAACCACACAAATATTCTATGTTCCTCCTCACAAGCTCTCTCTGTTCATTGAGGAAAgttcttcattttttggtGATACAAGGCATTGTGTTATTGCTAGAGAAATGACTAAGTTACACGAAGAGTTTTGGCGTGGTACTCTTGCTGAAGCTAAGGAAGCATTTTCAGCGCACCAACCGAAGGGAGAACTTACCGTATTGATAGAAAGGCAAACAAATGCCAAAGTTGAAACTCCTCCAGAGATTCAGCTTGAGAACGAACTGAGAGATTTGATTTCGCGTGGGGAGTCTCTTTCTACGGCTGTCAAATTGGTAGCGGGAGGAACATCAGTGAGCAGAAAAACAGTATATTCACTAGCattaagaaaatttgggaAGCAGCTTGAAGTGAAAgacaattcaaattcaaagta 1103 0.418 MLLRRVPMMAVTVAATLPIRYRKWQFLPSFSIRNELPFPHSAFVGPRNVVVVSFCSSSGASSRLAGQLHEYSAKPGSLKPGLYLVGTPIGNLEDITLRALRILKSANVILSEDTRHSGKLLQYYNIKTPLMSYHKFNESQREQVVLKRLKQGEIVALISDAGTPGISDPGMDLAKLCVSENIPVVPIPGPCALISALSASGLSTDEFTFVGFLPKHAGSRRKRLMVSANETTTQIFYVPPHKLSLFIEESSSFFGDTRHCVIAREMTKLHEEFWRGTLAEAKEAFSAHQPKGELTVLIERQTNAKVETPPEIQLENELRDLISRGESLSTAVKLVAGGTSVSRKTVYSLALRKFGKQLEVKDNSNSK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00861 367 SUPERFAMILY Tetrapyrrole methylase 80 298 IPR035996 GO:0008168
Bva10g00861 367 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 82 351 IPR008189 GO:0008168
Bva10g00861 367 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 69 361 IPR008189 GO:0008168
Bva10g00861 367 CDD RsmI 83 299 IPR008189 GO:0008168
Bva10g00861 367 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 81 300 IPR008189 GO:0008168
Bva10g00861 367 Gene3D - 77 189 IPR014777 GO:0008168
Bva10g00861 367 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 82 281 IPR000878 GO:0008168
Bva10g00861 367 Gene3D - 190 306 IPR014776 GO:0008168
Bva10g00861 367 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 159 170 IPR018063 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00861 Bva-Chr10 6606859 6610345 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00861 K07056 - twl:120009654 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00861 10 6606859 6610345 Bva10g00861 10 6606859 6610345 ECH