Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00850 ATGATTTCACAATTCTTCGTGCTTTCGCAGAGAGGCGATAACATCGTCTTCCGTGATTatcGAGGTGAAGTACAAAAAGGAAGTGCTGAGACTTTTTTCCGGAAAGTGAAGTTCTGGAAGGAGGATGGTGAAGGAGATGCTCCACCTGTATTTAATGTAGATGGTGTGAACTACTTTCATGTTAAGGTTGCTGGCTTGTTGTTCGTTGCTACAACTAGAGTCAACGTCTCCCCGTCTCTTGTACTGGAACTTTTGCAAAGAATTGGTCGTGTCATCAAAGATTACCTTGGTGTTCTTAATGAAGACTCTTTACGGAAAAACTTTGTTCTCGTGTATGAATTGCTCGATGAAGTCATTGATTTTGGTTACGTGCAAACAACATCAACTGAGGTTTTGAAGTCATATGTTTTCAATGAGCCTATTGTGGTTGATGCAGCACGACTGCCTCCCCTTGGTCCTGCATCCATTTTTATGCAAGGGACCAAACGAATGCCTGGAACAGCCATTACGAAGTCTGTCGTTGCAACTGAACCGGGGGGTAGGAAGAGGGATGAGGTTTTCGTTGATGTCATTGAGAAAATAAGTGTTACTTTCAACTCCAGTGGATTTATACTTACTAGTGAGATAGATGGCACCATACAAATGAAGAGTTATCTTACTGGAAACCCAGAGATTCGACTCGCTCTCAATGAGGATCTGAGTATAGGAGGAAGTGATTACAGAAGTTCAGCTGCTGTGATTCTAGATGATTGTAACTTCCATGAATCTGTGCACCTTGATAATTTCGATGTTGACCGAACTTTGACATTGGTACCTCCAGATGGTGAATTTCCTGTCATGAATTACCGTATGACTCAATCATTTAAGCCACCCTTTCGTATTAATGCATTGATTGAAGAAACAGGATCCCTGAAGGCTGAAGTAATCATTAAAGTGCGAGCTGAGTTTTCCTCAAGTGTCCATGCGAACACAGTTCTTGTACAGATGCCACTGCCGACGTTTACAACTCGCGTTAGTTTTGAGTTGGAGCCAGGAGTAGTAGGAAATACAACTGATTTTAGAGAAGCGAATAAGAGACTGGAGTGGGGTTTAAAAAAGATTGTTGGTGGATCTGAACATACTTTACGTGCAAAGCTGACGTTTTCACAGGAGTTACATGGAAACATCATGAAGGAGGCAGGGCCACTTAGCATGACTTTTACTATACCCATGTACAATGCTTCAAGGCTTCAGGTGAAATACTTGCAAATAGCAACGAAGTCAAAGGCGCGTAATCCTTATCGATGGtggaaaattttgaatggagAGCATGCGTTTTATGATGAGGATGCCCTCACTTTAGAATGCCTCCTAAAAAGGAATCTCATCTTACTTGGTCCATA 1382 0.4139 MISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDGEGDAPPVFNVDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIGRVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAARLPPLGPASIFMQGTKRMPGTAITKSVVATEPGGRKRDEVFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGGSDYRSSAAVILDDCNFHESVHLDNFDVDRTLTLVPPDGEFPVMNYRMTQSFKPPFRINALIEETGSLKAEVIIKVRAEFSSSVHANTVLVQMPLPTFTTRVSFELEPGVVGNTTDFREANKRLEWGLKKIVGGSEHTLRAKLTFSQELHGNIMKEAGPLSMTFTIPMYNASRLQVKYLQIATKSKARNPYRWWKILNGEHAFYDEDALTLECLLKRNLILLGP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00850 460 Gene3D Mu homology domain, subdomain B 290 401 - -
Bva10g00850 460 Gene3D Mu homology domain, subdomain B 182 433 - -
Bva10g00850 460 PANTHER AP COMPLEX SUBUNIT MU 2 433 - -
Bva10g00850 460 CDD AP-4_Mu4_Cterm 174 429 - -
Bva10g00850 460 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Bva10g00850 460 CDD AP4_Mu_N 3 143 - -
Bva10g00850 460 Gene3D - 1 141 - -
Bva10g00850 460 Pfam Clathrin adaptor complex small chain 1 132 IPR022775 -
Bva10g00850 460 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 431 IPR036168 -
Bva10g00850 460 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bva10g00850 460 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bva10g00850 460 PRINTS Clathrin coat assembly protein signature 361 372 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bva10g00850 460 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bva10g00850 460 PIRSF AP_complex_mu 1 441 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bva10g00850 460 ProSiteProfiles Mu homology domain (MHD) profile. 183 442 IPR028565 -
Bva10g00850 460 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 433 - -
Bva10g00850 460 Pfam Adaptor complexes medium subunit family 182 431 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00850 Bva-Chr10 6549011 6554835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00850 K12402 - gmx:100800985 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00850 10 6549011 6554835 Bva10g00850 10 6549011 6554835 ECH